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EBIGroupsBertone GroupSoftware

Bertone Group Software



GenemiR - Unified search of mammalian microRNA target predictions
Contact: Diva Tommei (diva@ebi.ac.uk)
Implementation Documentation Download
Windows (32-bit) User manual GenemiR_setup.exe

Genoman - A library for accessing and manipulating genome annotation data
Contact: Pär Engström (engstrom@ebi.ac.uk)
Implementation Documentation Download
Perl Reference  Installation Genoman.tar.gz

HTqPCR - Analysis of high-throughput quantitative real-time PCR data
Contact: Heidi Dvinge (heidi@ebi.ac.uk)
Implementation Documentation Download
R (Mac OS X 10.5 binary) Manual  Reference  Installation HTqPCR_1.1.4_OSX_10.5.tgz
R (Mac OS X 10.4 binary) Manual  Reference  Installation HTqPCR_1.1.4_OSX_10.4.tgz
R (Windows binary) Manual  Reference  Installation HTqPCR_1.1.4.zip
R (package source) Manual  Reference  Installation HTqPCR_1.1.4.tar.gz

PeakAnalyzer - Automated peak splitting and annotation of genomic loci
Contact: Mali Salmon-Divon (mali@ebi.ac.uk)
Implementation Documentation Download
Java Installation and usage   Sample data PeakAnalyzer.tar.gz

PeakAnnotator - Genome-wide association of experimental loci with functional elements
Contact: Mali Salmon-Divon (mali@ebi.ac.uk)
Implementation Documentation Download
Java Installation and usage   Sample data PeakAnnotator_Java.tar.gz
C++ (source and binaries) Installation and usage   Sample data PeakAnnotator_Cpp.tar.gz

PeakSplitter - Subdivision of ChIP-seq/ChIP-chip peak regions into discrete binding sites
Contact: Mali Salmon-Divon (mali@ebi.ac.uk)
Implementation Documentation Download
Java Installation and usage   Sample data PeakSplitter_Java.tar.gz
C++ (source and binaries) Installation and usage   Sample data PeakSplitter_Cpp.tar.gz


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