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Bertone Group Software
GenemiR - Unified search of mammalian microRNA target predictions
Contact: Diva Tommei (diva@ebi.ac.uk)
Implementation
Documentation
Download
Windows (32-bit)
User manual
GenemiR_setup.exe
Genoman - A library for accessing and manipulating genome annotation data
Contact: Pär Engström (engstrom@ebi.ac.uk)
Implementation
Documentation
Download
Perl
Reference
Installation
Genoman.tar.gz
HTqPCR - Analysis of high-throughput quantitative real-time PCR data
Contact: Heidi Dvinge (heidi@ebi.ac.uk)
Implementation
Documentation
Download
R (Mac OS X 10.5)
Manual
Reference
Installation
HTqPCR_1.9.0_OSX_10.5.tgz
R (Mac OS X 10.4)
Manual
Reference
Installation
HTqPCR_1.1.4_OSX_10.4.tgz
R (Windows 32- and 64-bit)
Manual
Reference
Installation
HTqPCR_1.9.0_Win.zip
R (Windows 32-bit only)
Manual
Reference
Installation
HTqPCR_1.5.2_Win32.zip
R (package source)
Manual
Reference
Installation
HTqPCR_1.9.0.tar.gz
PeakAnalyzer - Automated peak splitting and functional annotation
Contact: Mali Salmon-Divon (mali@ebi.ac.uk)
Implementation
Documentation
Download
Java (source and jar files)
Installation and usage
Sample data
PeakAnalyzer_1.4.tar.gz
PeakAnnotator - Functional annotation of binding and modification loci
Contact: Mali Salmon-Divon (mali@ebi.ac.uk)
Implementation
Documentation
Download
Java (source and jar files)
Installation and usage
Sample data
PeakAnnotator_Java_1.4.tar.gz
C++ (source and binaries)
Installation and usage
Sample data
PeakAnnotator_Cpp_1.4.tar.gz
PeakSplitter - Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks
Contact: Mali Salmon-Divon (mali@ebi.ac.uk)
Implementation
Documentation
Download
Java (source and jar files)
Installation and usage
Sample data
PeakSplitter_Java_1.0.tar.gz
C++ (source and binaries)
Installation and usage
Sample data
PeakSplitter_Cpp_1.0.tar.gz