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ASD - ALTERNATIVE SPLICING
Splice Signal AnalysisTool | Description | | Wrapper | A wrapper for all the below tools, i.e. Intron Analysis, Regulatory sequences, Exon Finder, Splicing Rainbow, and Blast analysis
| | Intron Analysis | Computes scores at Donor and Acceptor site; Identifies Branch Point (BP) and Polypyrimidine Tract (PPT) site in an Intronic sequence
| Individual analyses of the above Intron Analysis tool:
| | | Donor score analysis | Computes Donor Site Scores | | | Acceptor score analysis | Computes Acceptor Site Scores | | | PPT analysis | Computes positions of Polypyrimidine Tract (PPT) in intronic sequence | | | BP analysis | Computes positions and scores of Branch Point (BP) in intronic sequence
| | Exon Finder | Identifies potential exons in human genes
| | ORF and ATG context scoring | Identifies and scores alternative Open Reading Frames (ORF) and translates them into peptides.
| | Splicing Rainbow | Identifies binding sites for splice factors in RNA sequences
| | Regulatory Sequences | Allows to check your sequence against known regulatory sequences, and also allows one to query the regulatory sequence database for specific motifs.
| | Splice Sequence Search | Allows the user to perform Sequence search against AltSplice and AEDB databases (genes, splice patterens, exons, and peptides) via WU-Blast2 or Fasta.
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