P-GSE39566-4 - P-GSE39566-4

Type
normalization data transformation protocol
Description
Reads with phred score < 20 on 80% of the bases were filtered out with FASTX toolkit V0.0.13 Reads aligned to yeast genome using Bowtie 0.12.8 allowing unique alignments with 3 mismatches and taking the best stratum. Reads are extended to ChIP fragment size (180bp) Read coverage at each position in the genome is scaled to 1 million and normalized to total number of reads in the library. Coverage at each base is bundled as .bedGraph files. Genome_build: sacCer3 Supplementary_files_format_and_content: BEDGRAPH
Links
Experiment E-GEOD-39566