P-GSE42426-2 - P-GSE42426-2

Type
normalization data transformation protocol
Description
The 454 pyrosequencing reads were processed using the Ribosomal Database Project’s (RDP) Pyrosequencing Pipeline (Cole et al. 2005; Cole et al. 2009). The raw sequences were parsed by barcodes using the Pipeline Initial Process. The amplicons were screened for the presence of both forward and reverse primers, allowing 2 or fewer mismatches to the primer sequences, no ambiguous base calls and a 200-base minimum sequence length. Supplementary_files_format_and_content: tab-delimited text files listing phylotype abundance for each sample
Links
Experiment E-GEOD-42426