P-GSE48140-4 - P-GSE48140-4

normalization data transformation protocol
Library strategy: RPF Basecalls performed standard Illumina software Reads that map multiply to the genome were removed Remaining reads were mapped to the CDS sequences + 18 nucleotides of genomic flanking regions using Bowtie v0.12.7 Raw counts for each experiment were determined from mappings Normalization, fold-change, and significance calculations performed using DESeq (Anders and Huber 2010) software package in R. Genome_build: WS234 Supplementary_files_format_and_content: Matrix of normalized counts, fold change, and statistical output for genes listed by their associated protein name.
Experiment E-GEOD-48140