P-GSE44243-1 - P-GSE44243-1

Type
normalization data transformation protocol
Description
Take all the probes in promoter regions and perform Log2 transformation of the ratio ChIP/INPUT (Cy5/Cy3). Then use the maximal summary of three connected probes as the bound intensity of the promoter. The detailed analysis method (script) was published in Ci et al. Blood, 2009 May 28;113(22):5536-48 (PMID 19307668). ID_REF = VALUE = log2 processed ratio ChIP/INPUT (Cy5/Cy3, ch635/ch532, Channel_1/Channel_2) PRE_VALUE = processed ratio ChIP/INPUT (Cy5/Cy3, ch635/ch532, Channel_1/Channel_2)
Links
Experiment E-GEOD-44243