P-GSE44942-7 - P-GSE44942-7

Type
feature_extraction
Description
Illumina RTA 1.7.45 were used for base calling ChIP-seq reads were aligned to mm9 assembly using using Casava 1.7/1.8 or BWA with default parameters (Illumina; Li et al. Bioinformatics (2009) 25:1754-60). Data were filtered by removing the PCR duplicates using SAMTOOLS (Li et al. Bioinformatics (2009) 25, 2078-9) Peaks were called using MACS with default parameters genome build: mm9 processed data file format: bed files were generated using MACS with default parameter (Zhang et al. Genome Biol (2008) 9 (9))
Links
Experiment E-GEOD-44942