P-GSE10009-1 - P-GSE10009-1

Type
bioassay_data_transformation
Description
ID_REF = NCI mAdb well id plus replicate number

VALUE = same as UNF_VALUE but with flagged values removed

PRE_VALUE = Calibrated Ratio (CY5 channel/CY3 channel)

Slide_block = Array block location

Slide_column = Array column location

Slide_row = Array row location

CY5_mean = Red Channel Sample mean Signal (Background Subtracted)

CY5_SD = Red Channel Sample Standard Deviation

CY5_BKD_median = Red Channel Sample median Background Level

CY5_BKD_SD = Red Channel Sample Background Standard Deviation

CY3_mean = Green Channel Sample mean Signal (Background Subtracted)

CY3_SD = Green Channel Sample Standard Deviation

CY3_BKD_median = Green Channel Sample median Background Level

CY3_BKD_SD = Green Channel Sample Background Standard Deviation

Flag = Quality flag 0->good, -50->Not found, -100->Bad

UNF_VALUE = log ratio (log2 of PRE_VALUE)
Links
Experiment E-GEOD-10009