P-TABM-463 - P-TABM-463

Type
feature_extraction
Description
VIB-MAF Scanning v2 A. Equipment (1) Generation III Scanner, Amersham Biosciences (2) Scanner software: Default scanner software B. Scanning Protocol (1) Before scanning, adjust scanning parameters to: Full Slide, Cy5 PMT=550V, Cy3 PMT=550V The Generation III Scanner control software scans the microarray slide in two steps: The left and right half of the slide are scanned separately and consecutively. Both halves of the slide each always contain half of the Array Design Meta Columns As a result of scanning, 4 tiff image files are output with the following filenames: XXXXXXXX_L_1.GEL : image containing channel 1 intensity for left half slide XXXXXXXX_L_2.GEL : image containing channel 2 intensity for left half slide XXXXXXXX_R_1.GEL : image containing channel 1 intensity for right half slide XXXXXXXX_R_2.GEL : image containing channel 2 intensity for right half slide where XXXXXXXX is the eight digit barcode number of the microarray slide used.
Links
Experiment E-CAGE-198