Investigation Title	Transcription profiling of Arabidopsis development -AtGenExpress data set															
Comment[Submitted Name]	AtGenExpress: Expression Atlas of Arabidopsis Development															
Experimental Design	transcription profiling by array															
Experimental Design Term Source REF	EFO															
Comment[AEExperimentType]	transcription profiling by array															
Comment[AEExperimentDisplayName]	Transcription profiling by array of organism parts from different strains of Arabidopsis															
Comment[ArrayExpressReleaseDate]																
Comment[AEMIAMESCORE]	5															
Comment[ArrayExpressAccession]	E-TABM-17															
Comment[MAGETAB TimeStamp_Version]	2010-08-12 19:54:46 Last Changed Rev: 13058															
Experimental Factor Name	time	organism part	ecotype													
Experimental Factor Type	time	organism_part	ecotype													
Experimental Factor Term Source REF																
Person Last Name	Schmid	Vingron	Scholkopf	Pape	Demar	Lohmann	Davison	Weigel	Henz							
Person First Name	M	M	B	J	M	U	S	D	R							
Person Mid Initials				U.		J.	T.		S.							
Person Email								weigel@weigelworld.org								
Person Phone																
Person Fax																
Person Address																
Person Affiliation								Max Planck Institute for Developmental Biology								
Person Roles								submitter								
Person Roles Term Source REF																
Quality Control Type																
Quality Control Term Source REF																
Replicate Type																
Replicate Term Source REF																
Normalization Type																
Normalization Term Source REF																
Date of Experiment																
Public Release Date	2005-05-01																
PubMed ID	15806101															
Publication DOI	10.1038/ng1543 															
Publication Author List	Schmid M.; Davison T.S.; Henz S.R.; Pape U.J.; Demar M.; Vingron M.; Scholkopf B.; Weigel D.; Lohmann J.U.															
Publication Title	A gene expression map of Arabidopsis thaliana development															
Publication Status	published															
Publication Status Term Source REF	EFO															
Publication Status Term Accession Number	EFO_0001796															
Experiment Description	This experiment is the result of normalizing the data previously submitted to ArrayExpress with the accession number E-AFMX-9.															
Protocol Name	P-TABM-42	P-TABM-51	P-TABM-52	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	P-TABM-54	P-TABM-53	P-TABM-50									
Protocol Type	grow	nucleic_acid_extraction	labeling	hybridization	feature_extraction	image_acquisition	bioassay_data_transformation									
Protocol Description	Plants were grown in constant humidity and temperature conditions.	Total RNA was extracted and amplified during labelling process (ftp://ftp.arabidopsis.org/home/tair/Protocols/AtGenExpress_probe_s_102E57.pdf)	cRNA was labelled with biotin using Affymetrix Enzo Kit, in-vitro transcription method (ftp://ftp.arabidopsis.org/home/tair/Protocols/AtGenExpress_probe_s_102E57.pdf).	Title: Affymetrix EukGE-WS2v4_450 Hybridization. Description: 		Slides were scanned using GeneChip Scanner 3000 and GCOS software.	Raw data was normalized with RMA and mean and standard deviation over the repeats were calculated.									
Protocol Parameters	growth temperature;growth humidity;				Cell margin;Outlier high;Outlier low;Percentile;	scanner;										
Protocol Hardware						Affymetrix GeneChip Scanner 3000										
Protocol Software					Affymetrix GCOS software	Affymetrix GeneChip Operating Software										
Protocol Contact																
Protocol Term Source REF				mo			The MGED Ontology									
SDRF File	E-TABM-17.sdrf.txt															
Term Source Name		mo	nasc	ncbitax	tair_dev:1.27	po_development_and_growth_ontology1.1	Plant Ontology	tair_anat:1.14	tair_anat:1.2	po_structure_ontology1.1	tair	The MGED Ontology	ArrayExpress	EFO	mo	The MGED Ontology
Term Source File		http://mged.sourceforge.net/ontologies/MGEDontology.php	http://arabidopsis.info/catalogue.html	http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html	http://www.arabidopsis.org/info/ontologies/		http://www.plantontology.org/	http://www.arabidopsis.org/info/ontologies/	http://www.arabidopsis.org/info/ontologies/		http://arabidopsis.org	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://www.ebi.ac.uk/arrayexpress	http://www.ebi.ac.uk/efo/	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://mged.sourceforge.net/ontologies/MGEDontology.php
Term Source Version					1.27			1.14	1.2