Investigation Title	Transcription profiling analysis of microarray coverage of Univeral Human Reference RNA (UHRR) on 43,000-spot human microarrays with yeast controls	
Comment[Submitted Name]	Microarray Coverage of UHRR on 43,000-spot human microarrays with yeast controls	
Experimental Design	reference_design	transcription profiling by array	
Experimental Design Term Source REF	mo	EFO	
Comment[ArrayExpressReleaseDate]	2005-11-01	
Comment[AEMIAMESCORE]	4	
Comment[ArrayExpressAccession]	E-SMDB-2652	
Comment[MAGETAB TimeStamp_Version]	2011-06-28 23:15:02 Last Changed Rev: 14857	
Experimental Factor Name	
Experimental Factor Type	
Experimental Factor Term Source REF	
Person Last Name	Demeter	Perou	
Person First Name	Janos	Charles	
Person Mid Initials	
Person Email	jdemeter@genome.stanford.edu	cperou@med.unc.edu	
Person Phone	726-0075	919-843-5740	
Person Fax	723-7016	919-966-3015	
Person Address	Dept. Genetics, CCSR 2255, Stanford, CA, USA, 94305	Lineberger Comprehensive Cancer Center, Department of Genetics, CB# 7295, Room 12-046, Chapel Hill, NC, USA	
Person Affiliation	Stanford University	Univ. North Carolina at Chapel Hill	
Person Roles	submitter	submitter	
Person Roles Term Source REF	mo	mo	
Quality Control Type	
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Date of Experiment	
Public Release Date	2005-11-01	
PubMed ID	15113400	
Publication DOI	15113400	
Publication Author List	Novoradovskaya N, Whitfield ML, Basehore LS, Novoradovsky A, Pesich R, Usary J, Karaca M, Wong WK, Aprelikova O, Fero M, Perou CM, Botstein D, Braman J	
Publication Title	Universal Reference RNA as a standard for microarray experiments.	
Publication Status	journal_article	
Publication Status Term Source REF	
Experiment Description	Microarray coverage of UHRR was determined by counting the number of spots with intensities exceeding the 1% and 5% false positive rates defined using the yeast negative control spots. Seven microarrays from different print runs were used. In four experiments, the UHRR was labeled with Cy5 and in three experiments with Cy3. Labeled UHRR was co-hybridized with Common Reference RNA (CRF) developed at Stanford University (8) labeled with the alternate dye.	
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Protocol Term Source REF	
SDRF File	E-SMDB-2652.sdrf.txt	
Term Source Name	ncbitax	mo	ArrayExpress	mo	EFO	
Term Source File	http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://www.ebi.ac.uk/arrayexpress	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://www.ebi.ac.uk/efo/	
Term Source Version