Source Name	Comment[ENA_SAMPLE]	Material Type	Characteristics[organism]	Characteristics[cell type]	Characteristics[individual]	Protocol REF	Protocol REF	Protocol REF	Protocol REF	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Protocol REF	Performer	Assay Name	Technology Type	Comment[ENA_EXPERIMENT]	Scan Name	Comment[SUBMITTED_FILE_NAME]	Comment[ENA_RUN]	Comment[FASTQ_URI]	Comment[MD5]	Factor Value[individual]	Factor Value[cell type]
D6s4B5 1N-r1	ERS243119	cell	Mus musculus	intermediate reprogramming population	D6s4B5 1N-	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 1N-r1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_1N-r1	sequencing assay	ERX242681	D6s4B5_1N-r1.fq.gz	D6s4B5_1N-r1.fq.gz	ERR268465	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268465/ERR268465.fastq.gz	96924341476e15261c11471182b2d8df	D6s4B5 1N-	intermediate reprogramming population
D6s4B5 1N+r1	ERS243106	cell	Mus musculus	intermediate reprogramming population	D6s4B5 1N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 1N+r1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_1N+r1	sequencing assay	ERX242668	D6s4B5_1N+r1.fq.gz	D6s4B5_1N+r1.fq.gz	ERR268445	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268445/ERR268445.fastq.gz	5363987228ef1aef85c1ca3bafcfccc0	D6s4B5 1N+	intermediate reprogramming population
D6s4B5 2N-r1	ERS243127	cell	Mus musculus	intermediate reprogramming population	D6s4B5 2N-	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 2N-r1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_2N-r1	sequencing assay	ERX242689	D6s4B5_2N-r1.fq.gz	D6s4B5_2N-r1.fq.gz	ERR268457	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268457/ERR268457.fastq.gz	539b7f9c2da20a67b29f91430075af7d	D6s4B5 2N-	intermediate reprogramming population
D6s4B5 2N+r1	ERS243114	cell	Mus musculus	intermediate reprogramming population	D6s4B5 2N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 2N+r1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_2N+r1	sequencing assay	ERX242676	D6s4B5_2N+r1.fq.gz	D6s4B5_2N+r1.fq.gz	ERR268460	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268460/ERR268460.fastq.gz	6f96f2c3aff77807c8ba4c6f7ea1f338	D6s4B5 2N+	intermediate reprogramming population
D6s4B5 3N-r1	ERS243125	cell	Mus musculus	intermediate reprogramming population	D6s4B5 3N-	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 3N-r1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_3N-r1	sequencing assay	ERX242687	D6s4B5_3N-r1.fq.gz	D6s4B5_3N-r1.fq.gz	ERR268461	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268461/ERR268461.fastq.gz	c57c65256e4d7721abe37967abd0bb89	D6s4B5 3N-	intermediate reprogramming population
D6s4B5 3N+r1	ERS243126	cell	Mus musculus	intermediate reprogramming population	D6s4B5 3N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 3N+r1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_3N+r1	sequencing assay	ERX242688	D6s4B5_3N+r1.fq.gz	D6s4B5_3N+r1.fq.gz	ERR268456	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268456/ERR268456.fastq.gz	74487110feaef612e7540b8b67f3752f	D6s4B5 3N+	intermediate reprogramming population
D6s4B5 1N-r2	ERS243115	cell	Mus musculus	intermediate reprogramming population	D6s4B5 1N-	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 1N-r2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_1N-r2	sequencing assay	ERX242677	D6s4B5_1N-r2.fq.gz	D6s4B5_1N-r2.fq.gz	ERR268443	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268443/ERR268443.fastq.gz	ea835449affaf107949af67c17878774	D6s4B5 1N-	intermediate reprogramming population
D6s4B5 1N+r2	ERS243130	cell	Mus musculus	intermediate reprogramming population	D6s4B5 1N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 1N+r2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_1N+r2	sequencing assay	ERX242692	D6s4B5_1N+r2.fq.gz	D6s4B5_1N+r2.fq.gz	ERR268442	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268442/ERR268442.fastq.gz	05dd0bcad7a917f5aee31a0aea8c69f1	D6s4B5 1N+	intermediate reprogramming population
D6s4B5 2N-r2	ERS243121	cell	Mus musculus	intermediate reprogramming population	D6s4B5 2N-	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 2N-r2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_2N-r2	sequencing assay	ERX242683	D6s4B5_2N-r2.fq.gz	D6s4B5_2N-r2.fq.gz	ERR268455	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268455/ERR268455.fastq.gz	2b20aa438d942910bd1c3a307c956b14	D6s4B5 2N-	intermediate reprogramming population
D6s4B5 2N+r2	ERS243129	cell	Mus musculus	intermediate reprogramming population	D6s4B5 2N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 2N+r2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_2N+r2	sequencing assay	ERX242691	D6s4B5_2N+r2.fq.gz	D6s4B5_2N+r2.fq.gz	ERR268450	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268450/ERR268450.fastq.gz	bcf39d22a926905e2446d690f79e3520	D6s4B5 2N+	intermediate reprogramming population
D6s4B5 3N-r2	ERS243108	cell	Mus musculus	intermediate reprogramming population	D6s4B5 3N-	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 3N-r2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_3N-r2	sequencing assay	ERX242670	D6s4B5_3N-r2.fq.gz	D6s4B5_3N-r2.fq.gz	ERR268454	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268454/ERR268454.fastq.gz	5914721eca9e2efef5615d629e9d4e90	D6s4B5 3N-	intermediate reprogramming population
D6s4B5 3N+r2	ERS243123	cell	Mus musculus	intermediate reprogramming population	D6s4B5 3N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 3N+r2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_3N+r2	sequencing assay	ERX242685	D6s4B5_3N+r2.fq.gz	D6s4B5_3N+r2.fq.gz	ERR268452	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268452/ERR268452.fastq.gz	fab56a890b72ef4bfad3cb165f41450d	D6s4B5 3N+	intermediate reprogramming population
D6s4B5 2N+r3	ERS243113	cell	Mus musculus	intermediate reprogramming population	D6s4B5 2N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 2N+r3	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_2N+r3	sequencing assay	ERX242675	D6s4B5_2N+r3.fq.gz	D6s4B5_2N+r3.fq.gz	ERR268446	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268446/ERR268446.fastq.gz	2998f975a41902a58921635468cbdb05	D6s4B5 2N+	intermediate reprogramming population
D6s4B5 3N-r3	ERS243118	cell	Mus musculus	intermediate reprogramming population	D6s4B5 3N-	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 3N-r3	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_3N-r3	sequencing assay	ERX242680	D6s4B5_3N-r3.fq.gz	D6s4B5_3N-r3.fq.gz	ERR268448	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268448/ERR268448.fastq.gz	e7131f7b7341c08c31457f21b0a5b10f	D6s4B5 3N-	intermediate reprogramming population
D6s4B5 3N+r3	ERS243122	cell	Mus musculus	intermediate reprogramming population	D6s4B5 3N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 3N+r3	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_3N+r3	sequencing assay	ERX242684	D6s4B5_3N+r3.fq.gz	D6s4B5_3N+r3.fq.gz	ERR268444	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268444/ERR268444.fastq.gz	3e1265088e86e4cb7e3028b5361a2516	D6s4B5 3N+	intermediate reprogramming population
E14r1	ERS243111	cell	Mus musculus	mouse embryonic stem cell	E14	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	E14r1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	E14r1	sequencing assay	ERX242673	E14r1.fq.gz	E14r1.fq.gz	ERR268451	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268451/ERR268451.fastq.gz	b25585df118a55a2858f35f19cb8495b	E14	mouse embryonic stem cell
D6s4B5 iPSCr1	ERS243117	cell	Mus musculus	induced pluripotent stem cell	D6s4B5 iPSC	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 iPSCr1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_iPSCr1	sequencing assay	ERX242679	D6s4B5_iPSCr1.fq.gz	D6s4B5_iPSCr1.fq.gz	ERR268441	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268441/ERR268441.fastq.gz	179c10d5a359932ccb81225cddf17f50	D6s4B5 iPSC	induced pluripotent stem cell
Day15 D6s4B5 3N+r1	ERS243109	cell	Mus musculus	intermediate reprogramming population	Day15 D6s4B5 3N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	Day15 D6s4B5 3N+r1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	Day15_D6s4B5_3N+r1	sequencing assay	ERX242671	Day15_D6s4B5_3N+r1.fq.gz	Day15_D6s4B5_3N+r1.fq.gz	ERR268449	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268449/ERR268449.fastq.gz	24a7ad8911da602481e0b0f9520ab56d	Day15 D6s4B5 3N+	intermediate reprogramming population
D6s4B5 MEFr1	ERS243128	cell	Mus musculus	mouse embryonic fibroblast cell	D6s4B5 MEF	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 MEFr1	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_MEFr1	sequencing assay	ERX242690	D6s4B5_MEFr1.fq.gz	D6s4B5_MEFr1.fq.gz	ERR268464	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268464/ERR268464.fastq.gz	91e0bc4f6ec15833a24213844431f1e8	D6s4B5 MEF	mouse embryonic fibroblast cell
E14r2	ERS243107	cell	Mus musculus	mouse embryonic stem cell	E14	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	E14r2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	E14r2	sequencing assay	ERX242669	E14r2.fq.gz	E14r2.fq.gz	ERR268458	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268458/ERR268458.fastq.gz	5a4f3d33f2403865ade80fe4ede20be4	E14	mouse embryonic stem cell
D6s4B5 iPSCr2	ERS243120	cell	Mus musculus	induced pluripotent stem cell	D6s4B5 iPSC	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 iPSCr2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_iPSCr2	sequencing assay	ERX242682	D6s4B5_iPSCr2.fq.gz	D6s4B5_iPSCr2.fq.gz	ERR268463	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268463/ERR268463.fastq.gz	fb44220612ed0439ef2f6f5373441a6d	D6s4B5 iPSC	induced pluripotent stem cell
Day15 D6s4B5 3N+r2	ERS243124	cell	Mus musculus	intermediate reprogramming population	Day15 D6s4B5 3N+	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	Day15 D6s4B5 3N+r2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	Day15_D6s4B5_3N+r2	sequencing assay	ERX242686	Day15_D6s4B5_3N+r2.fq.gz	Day15_D6s4B5_3N+r2.fq.gz	ERR268453	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268453/ERR268453.fastq.gz	926e60c7d20747795a24b25d86c7c87c	Day15 D6s4B5 3N+	intermediate reprogramming population
D6s4B5 MEFr2	ERS243112	cell	Mus musculus	mouse embryonic fibroblast cell	D6s4B5 MEF	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 MEFr2	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_MEFr2	sequencing assay	ERX242674	D6s4B5_MEFr2.fq.gz	D6s4B5_MEFr2.fq.gz	ERR268447	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268447/ERR268447.fastq.gz	fee722d8aaa50417b0cf6acf1bd121a5	D6s4B5 MEF	mouse embryonic fibroblast cell
E14r3	ERS243116	cell	Mus musculus	mouse embryonic stem cell	E14	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	E14r3	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	E14r3	sequencing assay	ERX242678	E14r3.fq.gz	E14r3.fq.gz	ERR268462	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268462/ERR268462.fastq.gz	2134be1bcd9dba67afd1a9882eef7dc3	E14	mouse embryonic stem cell
D6s4B5 1N-r3	ERS243110	cell	Mus musculus	intermediate reprogramming population	D6s4B5 1N-	P-MTAB-32567	P-MTAB-32568	P-MTAB-32569	P-MTAB-32570	D6s4B5 1N-r3	SINGLE	TRANSCRIPTOMIC	RNA-Seq	RANDOM	P-MTAB-32571	Karolinska Institute	D6s4B5_1N-r3	sequencing assay	ERX242672	D6s4B5_1N-r3.fq.gz	D6s4B5_1N-r3.fq.gz	ERR268459	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/ERR268459/ERR268459.fastq.gz	a209f00a313e826805d9845493bad981	D6s4B5 1N-	intermediate reprogramming population