Source Name Characteristics [BioSourceType] Characteristics [GeneticModification] Term Source REF Term Accession Number Characteristics [Organism] Characteristics [Genotype] Provider Protocol REF Parameter Value [stop time] Parameter Value [start time] Parameter Value [max temperature] Parameter Value [min temperature] Protocol REF Sample Name Protocol REF Parameter Value [Amplification] Parameter Value [Extracted product] Extract Name Material Type Protocol REF Parameter Value [Amplification] Parameter Value [Amount of nucleic acid labeled] Parameter Value [Label used] Labeled Extract Name Label Material Type Protocol REF Parameter Value [time] Unit [TimeUnit] Parameter Value [Quantity of label target used] Unit [MassUnit] Parameter Value [Chamber type] Parameter Value [temperature] Unit [TemperatureUnit] Parameter Value [Volume] Unit [VolumeUnit] Hybridization Name Array Design REF Protocol REF Factor Value [strain] Scan Name Array Data File Comment [ArrayExpress FTP file] RB54 fresh_sample gene_knock_out EFO EFO_0000506 Bordetella bronchiseptica bvgS deletion Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB54 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_6_RB54vRB50 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_6_RB54vRB50 c31_RB54vRB50.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB50 fresh_sample Bordetella bronchiseptica wild_type Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB50 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_6_RB54vRB50 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_6_RB54vRB50 c31_RB54vRB50.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB54 fresh_sample gene_knock_out EFO EFO_0000506 Bordetella bronchiseptica bvgS deletion Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB54 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_3_RB50vRB54 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_3_RB50vRB54 c4_RB50vRB54.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB50 fresh_sample Bordetella bronchiseptica wild_type Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB50 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_3_RB50vRB54 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_3_RB50vRB54 c4_RB50vRB54.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB54 fresh_sample gene_knock_out EFO EFO_0000506 Bordetella bronchiseptica bvgS deletion Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB54 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL H_LabeledExtract A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion H_LabeledExtract b22_RB50vsRB54.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB50 fresh_sample Bordetella bronchiseptica wild_type Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB50 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL H_LabeledExtract A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion H_LabeledExtract b22_RB50vsRB54.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB54 fresh_sample gene_knock_out EFO EFO_0000506 Bordetella bronchiseptica bvgS deletion Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB54 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_4_RB54vRB50 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_4_RB54vRB50 c11_RB54vRB50.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB50 fresh_sample Bordetella bronchiseptica wild_type Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB50 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_4_RB54vRB50 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_4_RB54vRB50 c11_RB54vRB50.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB54 fresh_sample gene_knock_out EFO EFO_0000506 Bordetella bronchiseptica bvgS deletion Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB54 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_5_RB54vRB50 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_5_RB54vRB50 c24_RB54vRB50.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB50 fresh_sample Bordetella bronchiseptica wild_type Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB50 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_5_RB54vRB50 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_5_RB54vRB50 c24_RB54vRB50.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB54 fresh_sample gene_knock_out EFO EFO_0000506 Bordetella bronchiseptica bvgS deletion Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB54 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_2_RB50vRB54 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_2_RB50vRB54 c2_RB50vRB54.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip RB50 fresh_sample Bordetella bronchiseptica wild_type Peggy Cotter P-MEXP-40124 407 24 SS Broth C P-MEXP-40125 RB50 P-MEXP-40126 none total RNA nadc_extprtcl_1 total_RNA P-MEXP-40128 none 5 Cy5 LabeledExtract Cy5 total_RNA P-MEXP-40129 16 h 10 ug GeneMachines HybChamber 50 degree_C 45 uL Hyb_2_RB50vRB54 A-MEXP-629 P-MEXP-40130 wild_type;bvgS deletion Hyb_2_RB50vRB54 c2_RB50vRB54.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-961/E-MEXP-961.raw.1.zip