Source Name	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [age]	Unit[time unit]	Characteristics [initial time point]	Characteristics [cell type]	Characteristics[phenotype]	Characteristics [biosource type]	Characteristics [organism part]	Characteristics [genotype]	Characteristics [developmental stage]	Term Source REF	Term Accession Number	Characteristics [strain]	Characteristics [sex]	Characteristics [genetic modification]	Term Source REF	Term Accession Number	Protocol REF	Sample Name	Protocol REF	Parameter Value [Extracted product]	Parameter Value [Amplification]	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Protocol REF	Hybridization Name	Array Design REF	Protocol REF	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress Data Matrix FTP file]	Factor Value [genotype]
mice 2-control	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	6	week	birth	thymocyte	CD4 positive, CD8 positive	fresh_sample	thymus	wild type	adult	EFO	EFO_0001272	129/Sv x C57BL/6	mixed sex	none	  	  	P-MEXP-28374	mice 2-control	P-MEXP-26716	total RNA	none	P-MEXP-26715	E_mice 2-control	total_RNA	P-AFFY-2	L_mice 2-control	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	H_mice 2-control	A-AFFY-45	P-AFFY-6	H_mice 2-control	WTDP1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-MEXP-755-processed-data-1343525708.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.processed.1.zip	wild type
mice 2-KO	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	6	week	birth	thymocyte	CD4 positive, CD8 positive	fresh_sample	thymus	parp-2 knock out	adult	EFO	EFO_0001272	129/Sv x C57BL/6	mixed sex	gene knock out	EFO	EFO_0000506	P-MEXP-28374	mice 2-KO	P-MEXP-26716	total RNA	none	P-MEXP-26715	E_mice 2-KO	total_RNA	P-AFFY-2	L_mice 2-KO	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	H_mice 2-KO	A-AFFY-45	P-AFFY-6	H_mice 2-KO	KODP1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-MEXP-755-processed-data-1343525708.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.processed.1.zip	parp-2 knock out
mice 1-control	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	6	week	birth	thymocyte	CD4 positive, CD8 positive	fresh_sample	thymus	wild type	adult	EFO	EFO_0001272	129/Sv x C57BL/6	mixed sex	none	  	  	P-MEXP-28374	mice 1-control	P-MEXP-26716	total RNA	none	P-MEXP-26715	E_mice 1-control	total_RNA	P-AFFY-2	L_mice 1-control	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	H_mice 1-control	A-AFFY-45	P-AFFY-6	H_mice 1-control	Yelamos3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-MEXP-755-processed-data-1343525708.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.processed.1.zip	wild type
mice 1-KO	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	6	week	birth	thymocyte	CD4 positive, CD8 positive	fresh_sample	thymus	parp-2 knock out	adult	EFO	EFO_0001272	129/Sv x C57BL/6	mixed sex	gene knock out	EFO	EFO_0000506	P-MEXP-28374	mice 1-KO	P-MEXP-26716	total RNA	none	P-MEXP-26715	E_mice 1-KO	total_RNA	P-AFFY-2	L_mice 1-KO	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	H_mice 1-KO	A-AFFY-45	P-AFFY-6	H_mice 1-KO	Yelamos2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-MEXP-755-processed-data-1343525708.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.processed.1.zip	parp-2 knock out
mice 3-KO	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	6	week	birth	thymocyte	CD4 positive, CD8 positive	fresh_sample	thymus	parp-2 knock out	adult	EFO	EFO_0001272	129/Sv x C57BL/6	mixed sex	gene knock out	EFO	EFO_0000506	P-MEXP-28374	mice 3-KO	P-MEXP-26716	total RNA	none	P-MEXP-26715	E_mice 3-KO	total_RNA	P-AFFY-2	L_mice 3-KO	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	H_mice 3-KO	A-AFFY-45	P-AFFY-6	H_mice 3-KO	KODP2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-MEXP-755-processed-data-1343525708.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.processed.1.zip	parp-2 knock out
mice 3-control	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	6	week	birth	thymocyte	CD4 positive, CD8 positive	fresh_sample	thymus	wild type	adult	EFO	EFO_0001272	129/Sv x C57BL/6	mixed sex	none	  	  	P-MEXP-28374	mice 3-control	P-MEXP-26716	total RNA	none	P-MEXP-26715	E_mice 3-control	total_RNA	P-AFFY-2	L_mice 3-control	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	H_mice 3-control	A-AFFY-45	P-AFFY-6	H_mice 3-control	WTDP2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-MEXP-755-processed-data-1343525708.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-755/E-MEXP-755.processed.1.zip	wild type