Source Name Material Type Characteristics[Organism] Provider Comment[catalogue number] Characteristics[BioSourceType] Characteristics[developmental stage] Characteristics[age] Unit[TimeUnit] Characteristics[organism part] Characteristics[Sex] Characteristics[disease state] Characteristics[prognosis] Protocol REF Protocol REF Extract Name Material Type Protocol REF LabeledExtract Name Label Protocol REF Hybridization Name Array Design REF Protocol REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Derived Array Data File Comment [Derived ArrayExpress FTP file] Protocol REF Derived Array Data Matrix File Comment [Derived ArrayExpress FTP file] Factor Value[disease state] Factor Value[prognosis] Female reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100F frozen sample adult female normal normal control P-MTAB-30602 Extract_female_reference genomic_DNA P-MTAB-30601 LabeledExtract_female_reference Cy5 P-MTAB-30597 Hb_1 A-GEOD-14965 P-MTAB-30600 450952_A01_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.1.zip P-MTAB-30599 Norm_Imp_raw_output_DS1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Male reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100M frozen sample adult male normal normal control P-MTAB-30602 Extract_male_reference genomic_DNA P-MTAB-30601 LabeledExtract_male_reference Cy5 P-MTAB-30597 Hb_2 A-GEOD-14965 P-MTAB-30600 450952_A02_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.1.zip P-MTAB-30599 Norm_Imp_raw_output_DS2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Male reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100M frozen sample adult male normal normal control P-MTAB-30602 Extract_male_reference genomic_DNA P-MTAB-30601 LabeledExtract_male_reference Cy5 P-MTAB-30597 Hb_3 A-GEOD-14965 P-MTAB-30600 450952_A03_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.1.zip P-MTAB-30599 Norm_Imp_raw_output_DS3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Female reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100F frozen sample adult female normal normal control P-MTAB-30602 Extract_female_reference genomic_DNA P-MTAB-30601 LabeledExtract_female_reference Cy5 P-MTAB-30597 Hb_4 A-GEOD-14965 P-MTAB-30600 450958_A01_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.1.zip P-MTAB-30599 Norm_Imp_raw_output_DS4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Male reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100M frozen sample adult male normal normal control P-MTAB-30602 Extract_male_reference genomic_DNA P-MTAB-30601 LabeledExtract_male_reference Cy5 P-MTAB-30597 Hb_5 A-GEOD-14965 P-MTAB-30600 450958_A02_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.1.zip P-MTAB-30599 Norm_Imp_raw_output_DS5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Female reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100F frozen sample adult female normal normal control P-MTAB-30602 Extract_female_reference genomic_DNA P-MTAB-30601 LabeledExtract_female_reference Cy5 P-MTAB-30597 Hb_6 A-GEOD-14965 P-MTAB-30600 450958_A03_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.1.zip P-MTAB-30599 Norm_Imp_raw_output_DS6.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Female reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100F frozen sample adult female normal normal control P-MTAB-30602 Extract_female_reference genomic_DNA P-MTAB-30601 LabeledExtract_female_reference Cy5 P-MTAB-30597 Hb_7 A-GEOD-14965 P-MTAB-30600 450950_A01_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.2.zip P-MTAB-30599 Norm_Imp_raw_output_DS7.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Female reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100F frozen sample adult female normal normal control P-MTAB-30602 Extract_female_reference genomic_DNA P-MTAB-30601 LabeledExtract_female_reference Cy5 P-MTAB-30597 Hb_8 A-GEOD-14965 P-MTAB-30600 450950_A02_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.2.zip P-MTAB-30599 Norm_Imp_raw_output_DS8.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Male reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100M frozen sample adult male normal normal control P-MTAB-30602 Extract_male_reference genomic_DNA P-MTAB-30601 LabeledExtract_male_reference Cy5 P-MTAB-30597 Hb_9 A-GEOD-14965 P-MTAB-30600 450950_A03_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.2.zip P-MTAB-30599 Norm_Imp_raw_output_DS9.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Female reference genomic DNA Homo sapiens Kreatach Diagnostics, Amsterdam, The Netherlands EA-100F frozen sample adult female normal normal control P-MTAB-30602 Extract_female_reference genomic_DNA P-MTAB-30601 LabeledExtract_female_reference Cy5 P-MTAB-30597 Hb_10 A-GEOD-14965 P-MTAB-30600 450949_A01_2011-05-20_635.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.2.zip P-MTAB-30599 Norm_Imp_raw_output_DS10.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip normal normal control Lung_carcinoid_1 organism part Homo sapiens Sint Antonius Hospital Nieuwegein, The Netherlands frozen sample adult 58 year lung female atypical pulmonary carcinoid poor prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc1 genomic_DNA P-MTAB-30601 LabeledExtract1 Cy3 P-MTAB-30597 Hb_1 A-GEOD-14965 P-MTAB-30600 450952_A01_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.2.zip P-MTAB-30599 Norm_Imp_raw_output_DS1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, atypical poor prognostic case Lung_carcinoid_2 organism part Homo sapiens Netherlands Cancer Institute, Amsterdam, The Netherlands frozen sample adult 59 year lung male atypical pulmonary carcinoid poor prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc2 genomic_DNA P-MTAB-30601 LabeledExtract2 Cy3 P-MTAB-30597 Hb_2 A-GEOD-14965 P-MTAB-30600 450952_A02_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.2.zip P-MTAB-30599 Norm_Imp_raw_output_DS2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, atypical poor prognostic case Lung_carcinoid_3 organism part Homo sapiens Netherlands Cancer Institute, Amsterdam, The Netherlands frozen sample adult 63 year lung male atypical pulmonary carcinoid poor prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc3 genomic_DNA P-MTAB-30601 LabeledExtract3 Cy3 P-MTAB-30597 Hb_3 A-GEOD-14965 P-MTAB-30600 450952_A03_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.2.zip P-MTAB-30599 Norm_Imp_raw_output_DS3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, atypical poor prognostic case Lung_carcinoid_4 organism part Homo sapiens Sint Antonius Hospital Nieuwegein, The Netherlands frozen sample adult 68 year lung female atypical pulmonary carcinoid poor prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc4 genomic_DNA P-MTAB-30601 LabeledExtract4 Cy3 P-MTAB-30597 Hb_4 A-GEOD-14965 P-MTAB-30600 450958_A01_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.3.zip P-MTAB-30599 Norm_Imp_raw_output_DS4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, atypical poor prognostic case Lung_carcinoid_5 organism part Homo sapiens Netherlands Cancer Institute, Amsterdam, The Netherlands frozen sample adult 69 year lung male atypical pulmonary carcinoid poor prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc5 genomic_DNA P-MTAB-30601 LabeledExtract5 Cy3 P-MTAB-30597 Hb_5 A-GEOD-14965 P-MTAB-30600 450958_A02_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.3.zip P-MTAB-30599 Norm_Imp_raw_output_DS5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, atypical poor prognostic case Lung_carcinoid_6 organism part Homo sapiens Maastricht University Medical Center, The Netherlands frozen sample adult 63 year lung female typical pulmonary carcinoid favorable prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc6 genomic_DNA P-MTAB-30601 LabeledExtract6 Cy3 P-MTAB-30597 Hb_6 A-GEOD-14965 P-MTAB-30600 450958_A03_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.3.zip P-MTAB-30599 Norm_Imp_raw_output_DS6.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, typical favorable prognostic case Lung_carcinoid_7 organism part Homo sapiens Erasmus MC - Medical Center, Rotterdam, The Netherlands frozen sample adult 22 year lung female atypical pulmonary carcinoid favorable prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc7 genomic_DNA P-MTAB-30601 LabeledExtract7 Cy3 P-MTAB-30597 Hb_7 A-GEOD-14965 P-MTAB-30600 450950_A01_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.3.zip P-MTAB-30599 Norm_Imp_raw_output_DS7.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, atypical favorable prognostic case Lung_carcinoid_8 organism part Homo sapiens Netherlands Cancer Institute, Amsterdam, The Netherlands frozen sample adult 26 year lung female atypical pulmonary carcinoid favorable prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc8 genomic_DNA P-MTAB-30601 LabeledExtract8 Cy3 P-MTAB-30597 Hb_8 A-GEOD-14965 P-MTAB-30600 450950_A02_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.3.zip P-MTAB-30599 Norm_Imp_raw_output_DS8.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, atypical favorable prognostic case Lung_carcinoid_9 organism part Homo sapiens Maastricht University Medical Center, The Netherlands frozen sample adult 60 year lung male typical pulmonary carcinoid favorable prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc9 genomic_DNA P-MTAB-30601 LabeledExtract9 Cy3 P-MTAB-30597 Hb_9 A-GEOD-14965 P-MTAB-30600 450950_A03_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.3.zip P-MTAB-30599 Norm_Imp_raw_output_DS9.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, typical favorable prognostic case Lung_carcinoid_10 organism part Homo sapiens Maastricht University Medical Center, The Netherlands frozen sample adult 47 year lung female typical pulmonary carcinoid favorable prognostic case P-MTAB-30613 P-MTAB-30602 Extract_lc10 genomic_DNA P-MTAB-30601 LabeledExtract10 Cy3 P-MTAB-30597 Hb_10 A-GEOD-14965 P-MTAB-30600 450949_A01_2011-05-20_532.pair ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.raw.3.zip P-MTAB-30599 Norm_Imp_raw_output_DS10.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.2.zip P-MTAB-30598 Corrected_tumor.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3806/E-MEXP-3806.processed.1.zip Pulmonary carcinoid, typical favorable prognostic case