Source Name	Material Type	Characteristics[Organism]	Protocol REF	Protocol REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	LabeledExtract Name	Label	Protocol REF	Term Source REF	Hybridization Name	Array Design REF	Term Source REF	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Factor Value[TREATMENT]
Genomic control	whole_organism	Burkholderia cenocepacia	  	  	P-MTAB-14372	ArrayExpress	E_Genomic control	genomic_DNA	P-MTAB-23424	L_Genomic control	Cy3	P-MTAB-14375	ArrayExpress	Hybridization 1 - I	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	105_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	control
Genomic control	whole_organism	Burkholderia cenocepacia	  	  	P-MTAB-14372	ArrayExpress	E_Genomic control	genomic_DNA	P-MTAB-23424	L_Genomic control	Cy3	P-MTAB-14375	ArrayExpress	Hybridization 2 - I	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	105_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	control
Genomic control	whole_organism	Burkholderia cenocepacia	  	  	P-MTAB-14372	ArrayExpress	E_Genomic control	genomic_DNA	P-MTAB-23424	L_Genomic control	Cy3	P-MTAB-14375	ArrayExpress	Hybridization 3 - I	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	105_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	control
Genomic control	whole_organism	Burkholderia cenocepacia	  	  	P-MTAB-14372	ArrayExpress	E_Genomic control	genomic_DNA	P-MTAB-23424	L_Genomic control	Cy3	P-MTAB-14375	ArrayExpress	Hybridization 4 - N	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	106_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	control
Genomic control	whole_organism	Burkholderia cenocepacia	  	  	P-MTAB-14372	ArrayExpress	E_Genomic control	genomic_DNA	P-MTAB-23424	L_Genomic control	Cy3	P-MTAB-14375	ArrayExpress	Hybridization 5 - N	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	106_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	control
Genomic control	whole_organism	Burkholderia cenocepacia	  	  	P-MTAB-14372	ArrayExpress	E_Genomic control	genomic_DNA	P-MTAB-23424	L_Genomic control	Cy3	P-MTAB-14375	ArrayExpress	Hybridization 6 - N	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	106_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	control
Intracellular 1	whole_organism	Burkholderia cenocepacia	P-MTAB-23423	P-MTAB-23426	P-MTAB-23428	  	Extract I1	total_RNA	P-MTAB-23424	LE - I1	Cy5	P-MTAB-14375	ArrayExpress	Hybridization 1 - I	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	105_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	Intracellular bacteria
Intracellular 2	whole_organism	Burkholderia cenocepacia	P-MTAB-23423	P-MTAB-23426	P-MTAB-23428	  	Extract I2	total_RNA	P-MTAB-23424	LE - I2	Cy5	P-MTAB-14375	ArrayExpress	Hybridization 2 - I	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	105_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	Intracellular bacteria
Intracellular 3	whole_organism	Burkholderia cenocepacia	P-MTAB-23423	P-MTAB-23426	P-MTAB-23428	  	Extract I3	total_RNA	P-MTAB-23424	LE - I3	Cy5	P-MTAB-14375	ArrayExpress	Hybridization 3 - I	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	105_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	Intracellular bacteria
NME 1	whole_organism	Burkholderia cenocepacia	P-MTAB-23423	P-MTAB-23422	P-MTAB-23428	  	Extract N1	total_RNA	P-MTAB-23424	LE - N1	Cy5	P-MTAB-14375	ArrayExpress	Hybridization 4 - N	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	106_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	Non-macrophage-exposed bacteria
NME 2	whole_organism	Burkholderia cenocepacia	P-MTAB-23423	P-MTAB-23422	P-MTAB-23428	  	Extract N2	total_RNA	P-MTAB-23424	LE - N2	Cy5	P-MTAB-14375	ArrayExpress	Hybridization 5 - N	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	106_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	Non-macrophage-exposed bacteria
NME 3	whole_organism	Burkholderia cenocepacia	P-MTAB-23423	P-MTAB-23422	P-MTAB-23428	  	Extract N3	total_RNA	P-MTAB-23424	LE - N3	Cy5	P-MTAB-14375	ArrayExpress	Hybridization 6 - N	A-MEXP-1613	ArrayExpress	P-MTAB-14377	ArrayExpress	106_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3408/E-MEXP-3408.raw.1.zip	Non-macrophage-exposed bacteria