Source Name	Characteristics [Age]	Characteristics [TimeUnit]	Characteristics [InitialTimePoint]	Characteristics [Individual]	Characteristics [Genotype]	Characteristics [Organism]	Characteristics [DevelopmentalStage]	Characteristics [BioSourceType]	Characteristics [GeneticModification]	Characteristics [OrganismPart]	Characteristics [Ecotype]	Protocol REF	Protocol REF	Parameter Value [start time]	Parameter Value [min temperature]	Parameter Value [media]	Sample Name	Protocol REF	Parameter Value [Extracted product]	Parameter Value [Amplification]	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Protocol REF	Hybridization Name	Array Design REF	Protocol REF	Factor Value [genotype]	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]
Empty vector pCambia2300 control -3	20	days	flowering	Control-3	empty vector	Medicago truncatula	seed	fresh_sample	transformation	seed	R108-1	P-MEXP-107788	P-MEXP-107781	3	24	Potting soil	Empty vector pCambia2300 control -3	P-MEXP-107784	total RNA	none	Empty vector pCambia2300 control -3	total_RNA	P-AFFY-2	Empty vector pCambia2300 control -3	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	Empty vector pCambia2300 control -3	A-AFFY-71	P-AFFY-6	empty vector	Empty vector pCambia2300 control -3	Mtr_R108_3_3_Dixon_Marina_4_12_07.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-MEXP-1316-processed-data-1546440582.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.processed.1.zip
Empty vector pCambia2300 control -1	20	days	flowering	Control-1	empty vector	Medicago truncatula	seed	fresh_sample	transformation	seed	R108-1	P-MEXP-107788	P-MEXP-107781	3	24	Potting soil	Empty vector pCambia2300 control -1	P-MEXP-107784	total RNA	none	Empty vector pCambia2300 control -1	total_RNA	P-AFFY-2	Empty vector pCambia2300 control -1	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	Empty vector pCambia2300 control -1	A-AFFY-71	P-AFFY-6	empty vector	Empty vector pCambia2300 control -1	Mtr_R108_1_1_repeat_Dixon_Marina_4_12_07.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	E-MEXP-1316-processed-data-1546440582.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.processed.1.zip
pCambiaPhasMS12	20	days	flowering	MS12	mannan synthase transgenic	Medicago truncatula	seed	fresh_sample	transformation	seed	R108-1	P-MEXP-107788	P-MEXP-107781	3	24	Potting soil	pCambiaPhasMS12	P-MEXP-107784	total RNA	none	pCambiaPhasMS12	total_RNA	P-AFFY-2	pCambiaPhasMS12	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	pCambiaPhasMS12	A-AFFY-71	P-AFFY-6	mannan synthase transgenic	pCambiaPhasMS12	MS12_5_Dixon_Marina_4_12_07.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	E-MEXP-1316-processed-data-1546440582.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.processed.1.zip
pCambiaPhasMS6	20	days	flowering	MS6	mannan synthase transgenic	Medicago truncatula	seed	fresh_sample	transformation	seed	R108-1	P-MEXP-107788	P-MEXP-107781	3	24	Potting soil	pCambiaPhasMS6	P-MEXP-107784	total RNA	none	pCambiaPhasMS6	total_RNA	P-AFFY-2	pCambiaPhasMS6	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	pCambiaPhasMS6	A-AFFY-71	P-AFFY-6	mannan synthase transgenic	pCambiaPhasMS6	MS6_4_Dixon_Marina_4_12_07.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-MEXP-1316-processed-data-1546440582.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.processed.1.zip
Empty vector pCambia2300 control -2	20	days	flowering	Control-2	empty vector	Medicago truncatula	seed	fresh_sample	transformation	seed	R108-1	P-MEXP-107788	P-MEXP-107781	3	24	Potting soil	Empty vector pCambia2300 control -2	P-MEXP-107784	total RNA	none	Empty vector pCambia2300 control -2	total_RNA	P-AFFY-2	Empty vector pCambia2300 control -2	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	Empty vector pCambia2300 control -2	A-AFFY-71	P-AFFY-6	empty vector	Empty vector pCambia2300 control -2	Mtr_R108_2_2_Dixon_Marina_4_12_07.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-MEXP-1316-processed-data-1546440582.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.processed.1.zip
pCambiaPhasMS14	20	days	flowering	MS14	mannan synthase transgenic	Medicago truncatula	seed	fresh_sample	transformation	seed	R108-1	P-MEXP-107788	P-MEXP-107781	3	24	Potting soil	pCambiaPhasMS14	P-MEXP-107784	total RNA	none	pCambiaPhasMS14	total_RNA	P-AFFY-2	pCambiaPhasMS14	biotin	total_RNA	Affymetrix:Protocol:Hybridization-Unknown	pCambiaPhasMS14	A-AFFY-71	P-AFFY-6	mannan synthase transgenic	pCambiaPhasMS14	MS14_6_Dixon_Marina_4_12_07.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	E-MEXP-1316-processed-data-1546440582.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-1316/E-MEXP-1316.processed.1.zip