Source Name	Characteristics[organism]	Term Source REF	Term Accession Number	Characteristics[disease]	Term Source REF	Term Accession Number	Characteristics[organism part]	Term Source REF	Term Accession Number	Characteristics[cell line]	Term Source REF	Term Accession Number	Description	Protocol REF	Protocol REF	Sample Name	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Protocol REF	Hybridization Name	Array Design REF	Protocol REF	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress Data Matrix FTP file]	Factor Value[compound]
GSE8832GSM219395	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	chronic myelogenous leukemia 	EFO	EFO_0000339	bone marrow	EFO	EFO_0000868	K562	EFO	EFO_0002067	K562, 250nM1R-Chl, 24hrs, rep1:  [Sample Info] Chip Type HG-U133_Plus_2 Chip Lot 4020537 Operator administrator Sample Type human cell line K562 Description  Project Gottesfeld_Chou Comments 041407 Solution Type  Solution Lot  [Fluidics] Protocol EukGE-WS2v4_450 Wash A1 Recovery Mixes 0 Wash A1 Temperature (C) 25 Number of Wash A1 Cycles 10 Mixes per Wash A1 Cycle 2 Wash B Recovery Mixes 0 Wash B Temperature (C) 50 Number of Wash B Cycles 4 Mixes per Wash B Cycle 15 Stain Temperature (C) 25 First Stain Time (seconds) 600 Wash A2 Recovery Mixes 0 Wash A2 Temperature (C) 25 Number of Wash A2 Cycles 10 Mixes per Wash A2 Cycle 4 Second Stain Time (seconds) 600 Third Stain Time (seconds) 600 Wash A3 Recovery Mixes 0 Wash A3 Temperature (C) 30 Number of Wash A3 Cycles 15 Mixes per Wash A3 Cycle 4 Holding Temperature (C) 25 Station 1 Module 2 Hybridize Date Sep 07 2006 12:04PM [Scanner] Pixel Size 1.56 Filter 570 Scan Temperature  Scan Date Sep 07 2006 01:18PM Scanner ID 50206960 Number of Scans 1 Scanner Type M10. Organism: Homo sapiens (human) Morphology: lymphoblast ; Source: Organ: bone marrow; Disease: chronic myelogenous leukemia (CML) ; Age: 53 years ; Gender: female ; Cytogenetic Analysis: The stemline chromosome number is triploid with the 2S component occurring at 4.2%. Fifteen markers (M1 and M(15)) occurred in nearly all S metaphases. Spontaneous non-specific dicentrics occurred, but rarely. Unstable markers were also rarely seen. The X was disomic, and N9 was nullisomic.	P-G8832-5	P-G8832-1	GSE8832GSM219395 sample	P-G8832-4	GSE8832GSM219395 extract	total_RNA	P-G8832-3	GSE8832GSM219395 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	K562_1R-Chl_24hrs_rep1	A-AFFY-44	P-AFFY-6	K562_1R-Chl_24hrs_rep1	GSM219395.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-8832-processed-data-1631619709.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.processed.1.zip	1R-Chl
GSE8832GSM219393	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	chronic myelogenous leukemia 	EFO	EFO_0000339	bone marrow	EFO	EFO_0000868	K562	EFO	EFO_0002067	K562, NoTreatmentControl, 24hrs, rep2:  [Sample Info] Chip Type HG-U133_Plus_2 Chip Lot 4020537 Operator administrator Sample Type human cell line K562 Description  Project Gottesfeld_Chou Comments 041407 Solution Type  Solution Lot  [Fluidics] Protocol EukGE-WS2v4_450 Wash A1 Recovery Mixes 0 Wash A1 Temperature (C) 25 Number of Wash A1 Cycles 10 Mixes per Wash A1 Cycle 2 Wash B Recovery Mixes 0 Wash B Temperature (C) 50 Number of Wash B Cycles 4 Mixes per Wash B Cycle 15 Stain Temperature (C) 25 First Stain Time (seconds) 600 Wash A2 Recovery Mixes 0 Wash A2 Temperature (C) 25 Number of Wash A2 Cycles 10 Mixes per Wash A2 Cycle 4 Second Stain Time (seconds) 600 Third Stain Time (seconds) 600 Wash A3 Recovery Mixes 0 Wash A3 Temperature (C) 30 Number of Wash A3 Cycles 15 Mixes per Wash A3 Cycle 4 Holding Temperature (C) 25 Station 2 Module 4 Hybridize Date Sep 07 2006 12:04PM [Scanner] Pixel Size 1.56 Filter 570 Scan Temperature  Scan Date Sep 07 2006 12:55PM Scanner ID 50206960 Number of Scans 1 Scanner Type M10. Organism: Homo sapiens (human) Morphology: lymphoblast ; Source: Organ: bone marrow; Disease: chronic myelogenous leukemia (CML) ; Age: 53 years ; Gender: female ; Cytogenetic Analysis: The stemline chromosome number is triploid with the 2S component occurring at 4.2%. Fifteen markers (M1 and M(15)) occurred in nearly all S metaphases. Spontaneous non-specific dicentrics occurred, but rarely. Unstable markers were also rarely seen. The X was disomic, and N9 was nullisomic.	P-G8832-2	P-G8832-1	GSE8832GSM219393 sample	P-G8832-4	GSE8832GSM219393 extract	total_RNA	P-G8832-3	GSE8832GSM219393 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	K562_NoTreatmentControl_24hrs_rep2	A-AFFY-44	P-AFFY-6	K562_NoTreatmentControl_24hrs_rep2	GSM219393.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-8832-processed-data-1631619709.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.processed.1.zip	none
GSE8832GSM219392	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	chronic myelogenous leukemia 	EFO	EFO_0000339	bone marrow	EFO	EFO_0000868	K562	EFO	EFO_0002067	K562, NoTreatmentControl, 24hrs, rep1:  [Sample Info] Chip Type HG-U133_Plus_2 Chip Lot 4020537 Operator administrator Sample Type human cell line K562 Description  Project Gottesfeld_Chou Comments 041407 Solution Type  Solution Lot  [Fluidics] Protocol EukGE-WS2v4_450 Wash A1 Recovery Mixes 0 Wash A1 Temperature (C) 25 Number of Wash A1 Cycles 10 Mixes per Wash A1 Cycle 2 Wash B Recovery Mixes 0 Wash B Temperature (C) 50 Number of Wash B Cycles 4 Mixes per Wash B Cycle 15 Stain Temperature (C) 25 First Stain Time (seconds) 600 Wash A2 Recovery Mixes 0 Wash A2 Temperature (C) 25 Number of Wash A2 Cycles 10 Mixes per Wash A2 Cycle 4 Second Stain Time (seconds) 600 Third Stain Time (seconds) 600 Wash A3 Recovery Mixes 0 Wash A3 Temperature (C) 30 Number of Wash A3 Cycles 15 Mixes per Wash A3 Cycle 4 Holding Temperature (C) 25 Station 1 Module 3 Hybridize Date Sep 07 2006 12:04PM [Scanner] Pixel Size 1.56 Filter 570 Scan Temperature  Scan Date Sep 07 2006 01:30PM Scanner ID 50206960 Number of Scans 1 Scanner Type M10. Organism: Homo sapiens (human) Morphology: lymphoblast ; Source: Organ: bone marrow; Disease: chronic myelogenous leukemia (CML) ; Age: 53 years ; Gender: female ; Cytogenetic Analysis: The stemline chromosome number is triploid with the 2S component occurring at 4.2%. Fifteen markers (M1 and M(15)) occurred in nearly all S metaphases. Spontaneous non-specific dicentrics occurred, but rarely. Unstable markers were also rarely seen. The X was disomic, and N9 was nullisomic.	P-G8832-2	P-G8832-1	GSE8832GSM219392 sample	P-G8832-4	GSE8832GSM219392 extract	total_RNA	P-G8832-3	GSE8832GSM219392 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	K562_NoTreatmentControl_24hrs_rep1	A-AFFY-44	P-AFFY-6	K562_NoTreatmentControl_24hrs_rep1	GSM219392.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-8832-processed-data-1631619709.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.processed.1.zip	none
GSE8832GSM219394	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	chronic myelogenous leukemia 	EFO	EFO_0000339	bone marrow	EFO	EFO_0000868	K562	EFO	EFO_0002067	K562, NoTreatmentControl, 24hrs, rep3:  [Sample Info] Chip Type HG-U133_Plus_2 Chip Lot 4020537 Operator administrator Sample Type human cell line K562 Description  Project Gottesfeld_Chou Comments 041407 Solution Type  Solution Lot  [Fluidics] Protocol EukGE-WS2v4_450 Wash A1 Recovery Mixes 0 Wash A1 Temperature (C) 25 Number of Wash A1 Cycles 10 Mixes per Wash A1 Cycle 2 Wash B Recovery Mixes 0 Wash B Temperature (C) 50 Number of Wash B Cycles 4 Mixes per Wash B Cycle 15 Stain Temperature (C) 25 First Stain Time (seconds) 600 Wash A2 Recovery Mixes 0 Wash A2 Temperature (C) 25 Number of Wash A2 Cycles 10 Mixes per Wash A2 Cycle 4 Second Stain Time (seconds) 600 Third Stain Time (seconds) 600 Wash A3 Recovery Mixes 0 Wash A3 Temperature (C) 30 Number of Wash A3 Cycles 15 Mixes per Wash A3 Cycle 4 Holding Temperature (C) 25 Station 1 Module 1 Hybridize Date Sep 07 2006 12:04PM [Scanner] Pixel Size 1.56 Filter 570 Scan Temperature  Scan Date Sep 07 2006 01:07PM Scanner ID 50206960 Number of Scans 1 Scanner Type M10. Organism: Homo sapiens (human) Morphology: lymphoblast ; Source: Organ: bone marrow; Disease: chronic myelogenous leukemia (CML) ; Age: 53 years ; Gender: female ; Cytogenetic Analysis: The stemline chromosome number is triploid with the 2S component occurring at 4.2%. Fifteen markers (M1 and M(15)) occurred in nearly all S metaphases. Spontaneous non-specific dicentrics occurred, but rarely. Unstable markers were also rarely seen. The X was disomic, and N9 was nullisomic.	P-G8832-2	P-G8832-1	GSE8832GSM219394 sample	P-G8832-4	GSE8832GSM219394 extract	total_RNA	P-G8832-3	GSE8832GSM219394 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	K562_NoTreatmentControl_24hrs_rep3	A-AFFY-44	P-AFFY-6	K562_NoTreatmentControl_24hrs_rep3	GSM219394.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-8832-processed-data-1631619709.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.processed.1.zip	none
GSE8832GSM219397	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	chronic myelogenous leukemia 	EFO	EFO_0000339	bone marrow	EFO	EFO_0000868	K562	EFO	EFO_0002067	K562, 250nM1R-Chl, 24hrs, rep3:  [Sample Info] Chip Type HG-U133_Plus_2 Chip Lot 4020537 Operator administrator Sample Type human cell line K562 Description  Project Gottesfeld_Chou Comments 041407 Solution Type  Solution Lot  [Fluidics] Protocol EukGE-WS2v4_450 Wash A1 Recovery Mixes 0 Wash A1 Temperature (C) 25 Number of Wash A1 Cycles 10 Mixes per Wash A1 Cycle 2 Wash B Recovery Mixes 0 Wash B Temperature (C) 50 Number of Wash B Cycles 4 Mixes per Wash B Cycle 15 Stain Temperature (C) 25 First Stain Time (seconds) 600 Wash A2 Recovery Mixes 0 Wash A2 Temperature (C) 25 Number of Wash A2 Cycles 10 Mixes per Wash A2 Cycle 4 Second Stain Time (seconds) 600 Third Stain Time (seconds) 600 Wash A3 Recovery Mixes 0 Wash A3 Temperature (C) 30 Number of Wash A3 Cycles 15 Mixes per Wash A3 Cycle 4 Holding Temperature (C) 25 Station 1 Module 4 Hybridize Date Sep 07 2006 12:04PM [Scanner] Pixel Size 1.56 Filter 570 Scan Temperature  Scan Date Sep 07 2006 01:43PM Scanner ID 50206960 Number of Scans 1 Scanner Type M10. Organism: Homo sapiens (human) Morphology: lymphoblast ; Source: Organ: bone marrow; Disease: chronic myelogenous leukemia (CML) ; Age: 53 years ; Gender: female ; Cytogenetic Analysis: The stemline chromosome number is triploid with the 2S component occurring at 4.2%. Fifteen markers (M1 and M(15)) occurred in nearly all S metaphases. Spontaneous non-specific dicentrics occurred, but rarely. Unstable markers were also rarely seen. The X was disomic, and N9 was nullisomic.	P-G8832-5	P-G8832-1	GSE8832GSM219397 sample	P-G8832-4	GSE8832GSM219397 extract	total_RNA	P-G8832-3	GSE8832GSM219397 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	K562_1R-Chl_24hrs_rep3	A-AFFY-44	P-AFFY-6	K562_1R-Chl_24hrs_rep3	GSM219397.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-8832-processed-data-1631619709.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.processed.1.zip	1R-Chl
GSE8832GSM219396	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	chronic myelogenous leukemia 	EFO	EFO_0000339	bone marrow	EFO	EFO_0000868	K562	EFO	EFO_0002067	K562, 250nM1R-Chl, 24hrs, rep2:  [Sample Info] Chip Type HG-U133_Plus_2 Chip Lot 4020537 Operator administrator Sample Type human cell line K562 Description  Project Gottesfeld_Chou Comments 041407 Solution Type  Solution Lot  [Fluidics] Protocol EukGE-WS2v4_450 Wash A1 Recovery Mixes 0 Wash A1 Temperature (C) 25 Number of Wash A1 Cycles 10 Mixes per Wash A1 Cycle 2 Wash B Recovery Mixes 0 Wash B Temperature (C) 50 Number of Wash B Cycles 4 Mixes per Wash B Cycle 15 Stain Temperature (C) 25 First Stain Time (seconds) 600 Wash A2 Recovery Mixes 0 Wash A2 Temperature (C) 25 Number of Wash A2 Cycles 10 Mixes per Wash A2 Cycle 4 Second Stain Time (seconds) 600 Third Stain Time (seconds) 600 Wash A3 Recovery Mixes 0 Wash A3 Temperature (C) 30 Number of Wash A3 Cycles 15 Mixes per Wash A3 Cycle 4 Holding Temperature (C) 25 Station 1 Module 3 Hybridize Date Sep 07 2006 12:04PM [Scanner] Pixel Size 1.56 Filter 570 Scan Temperature  Scan Date Sep 07 2006 01:30PM Scanner ID 50206960 Number of Scans 1 Scanner Type M10. Organism: Homo sapiens (human) Morphology: lymphoblast ; Source: Organ: bone marrow; Disease: chronic myelogenous leukemia (CML) ; Age: 53 years ; Gender: female ; Cytogenetic Analysis: The stemline chromosome number is triploid with the 2S component occurring at 4.2%. Fifteen markers (M1 and M(15)) occurred in nearly all S metaphases. Spontaneous non-specific dicentrics occurred, but rarely. Unstable markers were also rarely seen. The X was disomic, and N9 was nullisomic.	P-G8832-5	P-G8832-1	GSE8832GSM219396 sample	P-G8832-4	GSE8832GSM219396 extract	total_RNA	P-G8832-3	GSE8832GSM219396 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	K562_1R-Chl_24hrs_rep2	A-AFFY-44	P-AFFY-6	K562_1R-Chl_24hrs_rep2	GSM219396.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-8832-processed-data-1631619709.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-8832/E-GEOD-8832.processed.1.zip	1R-Chl