Comment[ArrayExpressAccession]	E-GEOD-63873
MAGE-TAB Version	1.1					
Public Release Date	2015-08-28
Investigation Title	Retinoic acid signaling targets within the embryonic zebrafish eye during photoreceptor differentiation					
Comment[Submitted Name]	Retinoic acid signaling targets within the embryonic zebrafish eye during photoreceptor differentiation
Experiment Description	The signaling molecule retinoic acid (RA) regulates rod and cone photoreceptor fate, differentiation, and survival. The purpose of this study was to identify eye-specific genes controlled by RA during photoreceptor differentiation in the zebrafish. 6 samples; 3 replicates of 2 conditions					
Term Source Name	ArrayExpress	EFO
Term Source File	http://www.ebi.ac.uk/arrayexpress/	http://www.ebi.ac.uk/efo/efo.owl				
Person Last Name	Stenkamp	Stenkamp	Stevens			
Person First Name	Deborah	Deborah	Craig			
Person Mid Initials	Lynn					
Person Email	dstenkam@uidaho.edu					
Person Affiliation	University of Idaho					
Person Phone	208-885-8963					
Person Address	Biological Sciences, University of Idaho, 875 Perimeter Drive, MS 3051, Moscow, Idaho, USA					
Person Roles	submitter					
Protocol Name	P-GSE63873-1	P-GSE63873-4	P-GSE63873-5	P-GSE63873-2	P-GSE63873-3	P-GSE63873-6
Protocol Description	Algorithm: ExpressionStat 5.0 ID_REF =  VALUE = MAS5 signal ABS_CALL = indicating whether the transcript was present (P), absent (A), or marginal (M) DETECTION P-VALUE = 	Standard Affymetrix protocol	Standard Affymetrix protocol	28.5 deg C	total RNA qiagen from dissected eye tissues	Standard Affymetrix protocol
Protocol Type	normalization data transformation protocol	labelling protocol	hybridization protocol	growth protocol	nucleic acid extraction protocol	array scanning protocol
Experimental Factor Name	compound	FISH				
Experimental Factor Type	compound	FISH				
Publication Title	Retinoic Acid Signaling Regulates Differential Expression of the Tandemly-Duplicated Long Wavelength-Sensitive Cone Opsin Genes in Zebrafish.					
Publication Author List	Mitchell DM, Stevens CB, Frey RA, Hunter SS, Ashino R, Kawamura S, Stenkamp DL					
PubMed ID	26296154					
Publication DOI	10.1371/journal.pgen.1005483					
Comment[SecondaryAccession]	GSE63873					
Comment[GEOReleaseDate]	2015-08-28					
Comment[ArrayExpressSubmissionDate]	2014-12-04					
Comment[GEOLastUpdateDate]	2015-08-31					
Comment[AEExperimentType]	transcription profiling by array					
SDRF File	E-GEOD-63873.sdrf.txt