Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [phenotype] Characteristics [cell line] Characteristics [cell type] Term Source REF Term Accession Number Characteristics [organism] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [phenotype] GSM1423101 1 Foxd3 conditional knockout cells treated with Tamoxifen, biological rep3 CGR8 embryonic stem cells Foxd3 conditional knockout cells treated with Tamoxifen, biological rep3 Foxd3 knockout CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423101 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423101 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423101 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423101_BH11151-2-3_Foxd3_fl-fl_Tm2d3_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423101_sample_table.txt norm GSM1423101_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip Foxd3 knockout GSM1423100 1 Foxd3 conditional knockout cells treated with Tamoxifen, biological rep2 CGR8 embryonic stem cells Foxd3 conditional knockout cells treated with Tamoxifen, biological rep2 Foxd3 knockout CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423100 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423100 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423100 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423100_BH11151-2-3_Foxd3_fl-fl_Tm2d2_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423100_sample_table.txt norm GSM1423100_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip Foxd3 knockout GSM1423099 1 Foxd3 conditional knockout cells treated with Tamoxifen, biological rep1 CGR8 embryonic stem cells Foxd3 conditional knockout cells treated with Tamoxifen, biological rep1 Foxd3 knockout CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423099 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423099 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423099 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423099_BH11151-2-3_Foxd3_fl-fl_Tm2d1_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423099_sample_table.txt norm GSM1423099_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip Foxd3 knockout GSM1423098 1 Foxd3 conditional knockout cells treated with DMSO, biological rep3 CGR8 embryonic stem cells Foxd3 conditional knockout cells treated with DMSO, biological rep3 control of Foxd3 knockout CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423098 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423098 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423098 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423098_BH11151-2-3_Foxd3_fl-fl_control3_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423098_sample_table.txt norm GSM1423098_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip control of Foxd3 knockout GSM1423097 1 Foxd3 conditional knockout cells treated with DMSO, biological rep2 CGR8 embryonic stem cells Foxd3 conditional knockout cells treated with DMSO, biological rep2 control of Foxd3 knockout CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423097 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423097 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423097 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423097_BH11151-2-3_Foxd3_fl-fl_control2_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423097_sample_table.txt norm GSM1423097_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip control of Foxd3 knockout GSM1423096 1 Foxd3 conditional knockout cells treated with DMSO, biological rep1 CGR8 embryonic stem cells Foxd3 conditional knockout cells treated with DMSO, biological rep1 control of Foxd3 knockout CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423096 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423096 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423096 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423096_BH11151-2-3_Foxd3_fl-fl_control1_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423096_sample_table.txt norm GSM1423096_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip control of Foxd3 knockout GSM1423095 1 ESCs overexpressed Foxd3 and CA-NFATc3, biological rep3 CGR8 embryonic stem cells ESCs overexpressed Foxd3 and CA-NFATc3, biological rep3 overexpression of Foxd3 and CA-NFATc3 CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423095 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423095 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423095 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423095_BH11151-2-3_Fox-SP12-3_12-20_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423095_sample_table.txt norm GSM1423095_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip overexpression of Foxd3 and CA-NFATc3 GSM1423094 1 ESCs overexpressed Foxd3 and CA-NFATc3, biological rep2 CGR8 embryonic stem cells ESCs overexpressed Foxd3 and CA-NFATc3, biological rep2 overexpression of Foxd3 and CA-NFATc4 CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423094 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423094 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423094 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423094_BH11151-2-3_fox-sp12-2_12-17_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423094_sample_table.txt norm GSM1423094_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip overexpression of Foxd3 and CA-NFATc4 GSM1423093 1 ESCs overexpressed Foxd3 and CA-NFATc3, biological rep1 CGR8 embryonic stem cells ESCs overexpressed Foxd3 and CA-NFATc3, biological rep1 overexpression of Foxd3 and CA-NFATc5 CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423093 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423093 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423093 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423093_BH11151-2-3_fox-sp12-1_12-14_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423093_sample_table.txt norm GSM1423093_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip overexpression of Foxd3 and CA-NFATc5 GSM1423092 1 ESCs overexpressed CA-NFATc3, biological rep3 CGR8 embryonic stem cells ESCs overexpressed CA-NFATc3, biological rep3 overexpression of CA-NFATc3 CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423092 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423092 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423092 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423092_BH11151-2-3_SP12-3_12-20_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423092_sample_table.txt norm GSM1423092_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip overexpression of CA-NFATc3 GSM1423091 1 ESCs overexpressed CA-NFATc3, biological rep2 CGR8 embryonic stem cells ESCs overexpressed CA-NFATc3, biological rep2 overexpression of CA-NFATc3 CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423091 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423091 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423091 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423091_BH11151-2-3_Sp12-2_12-17_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423091_sample_table.txt norm GSM1423091_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip overexpression of CA-NFATc3 GSM1423090 1 ESCs overexpressed CA-NFATc3, biological rep1 CGR8 embryonic stem cells ESCs overexpressed CA-NFATc3, biological rep1 overexpression of CA-NFATc3 CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423090 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423090 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423090 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423090_BH11151-2-3_Sp12-1_12-14_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423090_sample_table.txt norm GSM1423090_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip overexpression of CA-NFATc3 GSM1423089 1 ESCs overexpressed Foxd3, biological rep3 CGR8 embryonic stem cells ESCs overexpressed Foxd3, biological rep3 overexpression of Foxd3 CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423089 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423089 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423089 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423089_BH11151-2-3_Fox-3_12-20_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423089_sample_table.txt norm GSM1423089_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip overexpression of Foxd3 GSM1423088 1 ESCs overexpressed Foxd3, biological rep2 CGR8 embryonic stem cells ESCs overexpressed Foxd3, biological rep2 overexpression of Foxd3 CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423088 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423088 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423088 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423088_BH11151-2-3_fox-2_12-17_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423088_sample_table.txt norm GSM1423088_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip overexpression of Foxd3 GSM1423087 1 ESCs overexpressed Foxd3, biological rep1 CGR8 embryonic stem cells ESCs overexpressed Foxd3, biological rep1 overexpression of Foxd3 CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423087 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423087 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423087 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423087_BH11151-2-3_fox-1_12-14_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423087_sample_table.txt norm GSM1423087_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip overexpression of Foxd3 GSM1423086 1 ESCs overexpressed vector control, biological rep3 CGR8 embryonic stem cells ESCs overexpressed vector control, biological rep3 control CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423086 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423086 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423086 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423086_BH11151-2-3_vector-3_12-20_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423086_sample_table.txt norm GSM1423086_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip control GSM1423085 1 ESCs overexpressed vector control, biological rep2 CGR8 embryonic stem cells ESCs overexpressed vector control, biological rep2 control CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423085 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423085 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423085 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423085_BH11151-2-3_Vector-2_12-17_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423085_sample_table.txt norm GSM1423085_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip control GSM1423084 1 ESCs overexpressed vector control, biological rep1 CGR8 embryonic stem cells ESCs overexpressed vector control, biological rep1 control CGR8 embryonic stem cell EFO http://purl.obolibrary.org/obo/CL_0002322 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE58960-2 ArrayExpress P-GSE58960-3 ArrayExpress P-GSE58960-4 ArrayExpress GSM1423084 extract 1 total RNA P-GSE58960-5 ArrayExpress GSM1423084 LE 1 biotin P-GSE58960-6 ArrayExpress GSM1423084 A-AFFY-45 ArrayExpress array assay P-GSE58960-7 ArrayExpress GSM1423084_BH11151-2-3_Vector-1_12-14_Mouse430_2_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.raw.1.zip P-GSE58960-1 ArrayExpress GSM1423084_sample_table.txt norm GSM1423084_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58960/E-GEOD-58960.processed.1.zip control