Source Name Comment [ENA_SAMPLE] Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [experiment group] Characteristics [organism] Term Source REF Term Accession Number Characteristics [strain] Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_LAYOUT] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Scan Name Comment [ENA_RUN] Comment [FASTQ_URI] Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [experiment group] FactorValue [strain] FactorValue [time] GSM1551301 1 SRS749155 Labeled DNA double strand breaks Processed_data file= MACS two sample analysis: AMc111214WT_HU_to_G1_peaks.bed Library Strategy: Break-Seq MEC1 (WT) G1 from Control Exp MEC1 (WT) G1 from Control Exp Control experiment Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA72 (MEC1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1551301 extract 1 Illumina MiSeq PAIRED other genomic OTHER genomic DNA GSM1551301 SRX764797 Illumina MiSeq (Saccharomyces cerevisiae) sequencing assay SRR1743128 SRR1743128 GSM1551301_AMc111214WT_HU_to_G1_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Control experiment WFA72 (MEC1) HU 1h GSM1551300 1 SRS749156 Labeled DNA double strand breaks Processed_data file= MACS one sample analysis: AMc111214WT_HU_peaks.bed Library Strategy: Break-Seq MEC1 (WT) HU 1h from Control Exp MEC1 (WT) HU 1h from Control Exp Control experiment Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA72 (MEC1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1551300 extract 1 Illumina MiSeq PAIRED other genomic OTHER genomic DNA GSM1551300 SRX764796 Illumina MiSeq (Saccharomyces cerevisiae) sequencing assay SRR1743127 SRR1743127 GSM1551300_AMc111214WT_HU_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Control experiment WFA72 (MEC1) HU 1h GSM1551299 1 SRS749154 Mock Labeled (without biotinylated dNTP mix) DNA double strand breaks Processed_data file= MACS two sample analysis: AMc111214WT_HU_to_minusBiotin_peaks.bed Library Strategy: Break-Seq MEC1 (WT) HU 1h from Control Exp mock labeling MEC1 (WT) HU 1h from Control Exp mock labeling Control experiment Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA72 (MEC1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1551299 extract 1 Illumina MiSeq PAIRED other genomic OTHER genomic DNA GSM1551299 SRX764795 Illumina MiSeq (Saccharomyces cerevisiae) sequencing assay SRR1743126 SRR1743126 GSM1551299_AMc111214WT_HU_to_minusBiotin_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Control experiment WFA72 (MEC1) HU 1h GSM1551298 1 SRS749151 Labeled DNA double strand breaks Processed_data file= MACS two sample analysis: AMc111214mec1_HU_to_G1_peaks.bed Library Strategy: Break-Seq mec1 G1 from Control Exp mec1 G1 from Control Exp Control experiment Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1551298 extract 1 Illumina MiSeq PAIRED other genomic OTHER genomic DNA GSM1551298 SRX764794 Illumina MiSeq (Saccharomyces cerevisiae) sequencing assay SRR1743125 SRR1743125 GSM1551298_AMc111214mec1_HU_to_G1_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Control experiment WFA73 (mec1-1) HU 1h GSM1551297 1 SRS749152 Labeled DNA double strand breaks Processed_data file= MACS one sample analysis: AMc111214mec1_HU_peaks.bed Library Strategy: Break-Seq mec1 HU 1h from Control Exp mec1 HU 1h from Control Exp Control experiment Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1551297 extract 1 Illumina MiSeq PAIRED other genomic OTHER genomic DNA GSM1551297 SRX764793 Illumina MiSeq (Saccharomyces cerevisiae) sequencing assay SRR1743124 SRR1743124 GSM1551297_AMc111214mec1_HU_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Control experiment WFA73 (mec1-1) HU 1h GSM1551296 1 SRS749153 Mock Labeled (without biotinylated dNTP mix) DNA double strand breaks Processed_data file= MACS two sample analysis: AMc111214mec1_HU_to_minusBiotin_peaks.bed Library Strategy: Break-Seq mec1 HU 1h from Control Exp mock labeling mec1 HU 1h from Control Exp mock labeling Control experiment Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1551296 extract 1 Illumina MiSeq PAIRED other genomic OTHER genomic DNA GSM1551296 SRX764792 Illumina MiSeq (Saccharomyces cerevisiae) sequencing assay SRR1743123 SRR1743123 GSM1551296_AMc111214mec1_HU_to_minusBiotin_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Control experiment WFA73 (mec1-1) HU 1h GSM1419923 1 SRS646154 Library Strategy: Break-Seq Sample name: EH052313C Processed using two-sample analysis in MACS: EH052313C against EH052313A Saccharomyces cerevisiae_wt_R MEC1 (WT) R 1h from Exp C Exp C Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA72 (MEC1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419923 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419923 SRX625536 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460574_2.fastq.gz SRR1460574 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/004/SRR1460574/SRR1460574_2.fastq.gz GSM1419923_EH052313CtoA_MEC1_R1htoHU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp C WFA72 (MEC1) R 1h GSM1419923 1 SRS646154 Library Strategy: Break-Seq Sample name: EH052313C Processed using two-sample analysis in MACS: EH052313C against EH052313A Saccharomyces cerevisiae_wt_R MEC1 (WT) R 1h from Exp C Exp C Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA72 (MEC1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419923 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419923 SRX625536 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460574_1.fastq.gz SRR1460574 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/004/SRR1460574/SRR1460574_1.fastq.gz GSM1419923_EH052313CtoA_MEC1_R1htoHU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp C WFA72 (MEC1) R 1h GSM1419922 1 SRS646153 Library Strategy: Break-Seq Sample name: EH052313A Processed using one-sample analysis in MACS: EH052313A Saccharomyces cerevisiae_wt_HU MEC1 (WT) HU 1h from Exp C Exp C Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA72 (MEC1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419922 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419922 SRX625535 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460573_2.fastq.gz SRR1460573 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/003/SRR1460573/SRR1460573_2.fastq.gz GSM1419922_EH052313A_MEC1_HU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp C WFA72 (MEC1) HU 1h GSM1419922 1 SRS646153 Library Strategy: Break-Seq Sample name: EH052313A Processed using one-sample analysis in MACS: EH052313A Saccharomyces cerevisiae_wt_HU MEC1 (WT) HU 1h from Exp C Exp C Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA72 (MEC1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419922 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419922 SRX625535 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460573_1.fastq.gz SRR1460573 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/003/SRR1460573/SRR1460573_1.fastq.gz GSM1419922_EH052313A_MEC1_HU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp C WFA72 (MEC1) HU 1h GSM1419921 1 SRS646151 Library Strategy: Break-Seq Sample name: EH052313I Processed using two-sample analysis in MACS: EH052313I against EH052313G Saccharomyces cerevisiae_mec1_R mec1 R 1h from Exp B Exp B Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419921 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419921 SRX625534 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460572_2.fastq.gz SRR1460572 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/002/SRR1460572/SRR1460572_2.fastq.gz GSM1419921_EH052313ItoG_mec1_R1htoHU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp B WFA73 (mec1-1) R 1h GSM1419921 1 SRS646151 Library Strategy: Break-Seq Sample name: EH052313I Processed using two-sample analysis in MACS: EH052313I against EH052313G Saccharomyces cerevisiae_mec1_R mec1 R 1h from Exp B Exp B Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419921 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419921 SRX625534 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460572_1.fastq.gz SRR1460572 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/002/SRR1460572/SRR1460572_1.fastq.gz GSM1419921_EH052313ItoG_mec1_R1htoHU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp B WFA73 (mec1-1) R 1h GSM1419920 1 SRS646152 Library Strategy: Break-Seq Sample name: EH040213G Processed using two-sample analysis in MACS: EH040213G againt EH040213H Saccharomyces cerevisiae_mec1_R mec1 R 1h from Exp A Exp A Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419920 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419920 SRX625533 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460571_2.fastq.gz SRR1460571 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/001/SRR1460571/SRR1460571_2.fastq.gz GSM1419920_EH040213GtoH_mec1_R1htoHU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp A WFA73 (mec1-1) R 1h GSM1419920 1 SRS646152 Library Strategy: Break-Seq Sample name: EH040213G Processed using two-sample analysis in MACS: EH040213G againt EH040213H Saccharomyces cerevisiae_mec1_R mec1 R 1h from Exp A Exp A Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419920 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419920 SRX625533 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460571_1.fastq.gz SRR1460571 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/001/SRR1460571/SRR1460571_1.fastq.gz GSM1419920_EH040213GtoH_mec1_R1htoHU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp A WFA73 (mec1-1) R 1h GSM1419919 1 SRS646150 Library Strategy: Break-Seq Sample name: EH052313G Processed using one-sample analysis in MACS: EH052313G Saccharomyces cerevisiae_mec1_HU mec1 HU 1h from Exp B Exp B Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419919 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419919 SRX625532 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460570_2.fastq.gz SRR1460570 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/000/SRR1460570/SRR1460570_2.fastq.gz GSM1419919_EH052313G_mec1_HU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp B WFA73 (mec1-1) HU 1h GSM1419919 1 SRS646150 Library Strategy: Break-Seq Sample name: EH052313G Processed using one-sample analysis in MACS: EH052313G Saccharomyces cerevisiae_mec1_HU mec1 HU 1h from Exp B Exp B Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419919 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419919 SRX625532 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460570_1.fastq.gz SRR1460570 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/000/SRR1460570/SRR1460570_1.fastq.gz GSM1419919_EH052313G_mec1_HU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp B WFA73 (mec1-1) HU 1h GSM1419918 1 SRS646149 Library Strategy: Break-Seq Sample name: EH040213H Processed using one-sample analysis in MACS: EH040213H Saccharomyces cerevisiae_mec1_HU mec1 HU 1h from Exp A Exp A Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419918 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419918 SRX625531 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460569_2.fastq.gz SRR1460569 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/009/SRR1460569/SRR1460569_2.fastq.gz GSM1419918_EH040213H_mec1_HU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp A WFA73 (mec1-1) HU 1h GSM1419918 1 SRS646149 Library Strategy: Break-Seq Sample name: EH040213H Processed using one-sample analysis in MACS: EH040213H Saccharomyces cerevisiae_mec1_HU mec1 HU 1h from Exp A Exp A Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419918 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419918 SRX625531 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460569_1.fastq.gz SRR1460569 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/009/SRR1460569/SRR1460569_1.fastq.gz GSM1419918_EH040213H_mec1_HU1h_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp A WFA73 (mec1-1) HU 1h GSM1419917 1 SRS646148 Library Strategy: Break-Seq Sample name: AB052313F Processed using one-sample analysis in MACS: AB052313F Saccharomyces cerevisiae_mec1_G1_bamH1 mec1 G1 from Exp A digested with BamHI Exp A Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419917 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419917 SRX625530 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460568_2.fastq.gz SRR1460568 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/008/SRR1460568/SRR1460568_2.fastq.gz GSM1419917_AB052313F_mec1_G1_BamHI_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp A WFA73 (mec1-1) G1 GSM1419917 1 SRS646148 Library Strategy: Break-Seq Sample name: AB052313F Processed using one-sample analysis in MACS: AB052313F Saccharomyces cerevisiae_mec1_G1_bamH1 mec1 G1 from Exp A digested with BamHI Exp A Saccharomyces cerevisiae EFO http://purl.obolibrary.org/obo/NCBITaxon_4932 WFA73 (mec1-1) P-GSE58808-1 ArrayExpress P-GSE58808-2 ArrayExpress P-GSE58808-3 ArrayExpress GSM1419917 extract 1 Illumina HiSeq 2000 PAIRED other genomic OTHER genomic DNA GSM1419917 SRX625530 Illumina HiSeq 2000 (Saccharomyces cerevisiae) sequencing assay SRR1460568_1.fastq.gz SRR1460568 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR146/008/SRR1460568/SRR1460568_1.fastq.gz GSM1419917_AB052313F_mec1_G1_BamHI_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58808/E-GEOD-58808.processed.1.zip Exp A WFA73 (mec1-1) G1