Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [ecotype]	Characteristics [genotype]	Characteristics [line]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]	FactorValue [LINE]
GSM1334047 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with empty vector. It is the third of three biological replicates used in this experiment, each from separate cultures (line Cont5-1).	Arabidopsis thaliana ecotype Columbia transformed with empty vector	Empty vector transformant_line Cont5-1	Columbia	Empty vector transformant	Cont5-1	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334047 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334047 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334047	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334047_555898A10_Slot20_2013-04-17_532_RMA.calls	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334047_sample_table.txt norm	GSM1334047_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Empty vector transformant	Cont5-1
GSM1334047 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with empty vector. It is the third of three biological replicates used in this experiment, each from separate cultures (line Cont5-1).	Arabidopsis thaliana ecotype Columbia transformed with empty vector	Empty vector transformant_line Cont5-1	Columbia	Empty vector transformant	Cont5-1	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334047 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334047 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334047	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334047_555898A10_Slot20_2013-04-17_532.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334047_sample_table.txt norm	GSM1334047_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Empty vector transformant	Cont5-1
GSM1334046 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with empty vector. It is the second of three biological replicates used in this experiment, each from separate cultures (line Cont2-3).	Arabidopsis thaliana ecotype Columbia transformed with empty vector	Empty vector transformant_line Cont2-3	Columbia	Empty vector transformant	Cont2-3	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334046 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334046 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334046	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334046_555898A04_Slot20_2013-04-17_532_RMA.calls	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334046_sample_table.txt norm	GSM1334046_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Empty vector transformant	Cont2-3
GSM1334046 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with empty vector. It is the second of three biological replicates used in this experiment, each from separate cultures (line Cont2-3).	Arabidopsis thaliana ecotype Columbia transformed with empty vector	Empty vector transformant_line Cont2-3	Columbia	Empty vector transformant	Cont2-3	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334046 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334046 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334046	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334046_555898A04_Slot20_2013-04-17_532.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334046_sample_table.txt norm	GSM1334046_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Empty vector transformant	Cont2-3
GSM1334045 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with empty vector. It is the first of three biological replicates used in this experiment, each from separate cultures (line Cont1-1).	Arabidopsis thaliana ecotype Columbia transformed with empty vector	Empty vector transformant_line Cont1-1	Columbia	Empty vector transformant	Cont1-1	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334045 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334045 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334045	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334045_555898A03_Slot20_2013-04-17_532_RMA.calls	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334045_sample_table.txt norm	GSM1334045_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Empty vector transformant	Cont1-1
GSM1334045 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with empty vector. It is the first of three biological replicates used in this experiment, each from separate cultures (line Cont1-1).	Arabidopsis thaliana ecotype Columbia transformed with empty vector	Empty vector transformant_line Cont1-1	Columbia	Empty vector transformant	Cont1-1	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334045 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334045 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334045	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334045_555898A03_Slot20_2013-04-17_532.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334045_sample_table.txt norm	GSM1334045_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Empty vector transformant	Cont1-1
GSM1334044 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR. It is the third of three biological replicates used in this experiment, each from separate cultures (line PAR36-4).	Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR construct	MYBPAR expressing Arabidopsis_line PAR36-4	Columbia	Plant transformed with 35S::VvMYBPAR construct	PAR36-4	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334044 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334044 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334044	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334044_555898A08_Slot20_2013-04-17_532_RMA.calls	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334044_sample_table.txt norm	GSM1334044_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Plant transformed with 35S::VvMYBPAR construct	PAR36-4
GSM1334044 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR. It is the third of three biological replicates used in this experiment, each from separate cultures (line PAR36-4).	Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR construct	MYBPAR expressing Arabidopsis_line PAR36-4	Columbia	Plant transformed with 35S::VvMYBPAR construct	PAR36-4	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334044 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334044 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334044	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334044_555898A08_Slot20_2013-04-17_532.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334044_sample_table.txt norm	GSM1334044_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Plant transformed with 35S::VvMYBPAR construct	PAR36-4
GSM1334043 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR. It is the second of three biological replicates used in this experiment, each from separate cultures (line PAR9-2).	Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR construct	MYBPAR expressing Arabidopsis_line PAR9-2	Columbia	Plant transformed with 35S::VvMYBPAR construct	PAR9-2	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334043 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334043 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334043	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334043_555898A07_Slot20_2013-04-17_532_RMA.calls	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334043_sample_table.txt norm	GSM1334043_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Plant transformed with 35S::VvMYBPAR construct	PAR9-2
GSM1334043 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR. It is the second of three biological replicates used in this experiment, each from separate cultures (line PAR9-2).	Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR construct	MYBPAR expressing Arabidopsis_line PAR9-2	Columbia	Plant transformed with 35S::VvMYBPAR construct	PAR9-2	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334043 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334043 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334043	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334043_555898A07_Slot20_2013-04-17_532.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334043_sample_table.txt norm	GSM1334043_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Plant transformed with 35S::VvMYBPAR construct	PAR9-2
GSM1334042 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR. It is the first of three biological replicates used in this experiment, each from separate cultures (line PAR18-2).	Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR construct	MYBPAR expressing Arabidopsis_line PAR18-2	Columbia	Plant transformed with 35S::VvMYBPAR construct	PAR18-2	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334042 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334042 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334042	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334042_555898A05_Slot20_2013-04-17_532_RMA.calls	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334042_sample_table.txt norm	GSM1334042_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Plant transformed with 35S::VvMYBPAR construct	PAR18-2
GSM1334042 1	This sample is of Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR. It is the first of three biological replicates used in this experiment, each from separate cultures (line PAR18-2).	Arabidopsis thaliana ecotype Columbia transformed with 35S::VvMYBPAR construct	MYBPAR expressing Arabidopsis_line PAR18-2	Columbia	Plant transformed with 35S::VvMYBPAR construct	PAR18-2	Arabidopsis thaliana	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3702	P-GSE55318-2	ArrayExpress	P-GSE55318-3	ArrayExpress	GSM1334042 extract 1	total RNA	P-GSE55318-4	ArrayExpress	GSM1334042 LE 1	Cy3	P-GSE55318-5	ArrayExpress	GSM1334042	A-GEOD-13970	ArrayExpress	array assay	P-GSE55318-6	ArrayExpress	GSM1334042_555898A05_Slot20_2013-04-17_532.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.raw.1.zip	P-GSE55318-1	ArrayExpress	GSM1334042_sample_table.txt norm	GSM1334042_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-55318/E-GEOD-55318.processed.1.zip	Plant transformed with 35S::VvMYBPAR construct	PAR18-2