Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [environment]	Characteristics [growth media]	Characteristics [growth phase]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [ENVIRONMENT]	FactorValue [GROWTH MEDIA]	FactorValue [GROWTH PHASE]
GSM1324413 1	cells recovered after 1h of inoculation in sand contaminated with dibenzofuran, precultured in salicylate	Inoculum in sand+DBF from salicylate	Inoculum in sand+DBF from salicylate 3	Sand	Salicylate	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324413 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324413 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324413	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324413_SAL-DBF3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324413_sample_table.txt norm	GSM1324413_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	Salicylate	Lag phase
GSM1324412 1	cells recovered after 1h of inoculation in sand contaminated with dibenzofuran, precultured in salicylate	Inoculum in sand+DBF from salicylate	Inoculum in sand+DBF from salicylate 2	Sand	Salicylate	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324412 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324412 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324412	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324412_SAL-DBF2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324412_sample_table.txt norm	GSM1324412_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	Salicylate	Lag phase
GSM1324411 1	cells recovered after 1h of inoculation in sand contaminated with dibenzofuran, precultured in salicylate	Inoculum in sand+DBF from salicylate	Inoculum in sand+DBF from salicylate 1	Sand	Salicylate	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324411 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324411 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324411	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324411_SAL-DBF1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324411_sample_table.txt norm	GSM1324411_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	Salicylate	Lag phase
GSM1324410 1	cells recovered after 1h of inoculation in only sand, precultured in salicylate	Inoculum in only sand from salicylate	Inoculum in only sand from salicylate 3	Sand	Salicylate	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324410 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324410 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324410	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324410_SAL-NOTH3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324410_sample_table.txt norm	GSM1324410_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	Salicylate	Lag phase
GSM1324409 1	cells recovered after 1h of inoculation in only sand, precultured in salicylate	Inoculum in only sand from salicylate	Inoculum in only sand from salicylate 2	Sand	Salicylate	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324409 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324409 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324409	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324409_SAL-NOTH2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324409_sample_table.txt norm	GSM1324409_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	Salicylate	Lag phase
GSM1324408 1	cells recovered after 1h of inoculation in only sand, precultured in salicylate	Inoculum in only sand from salicylate	Inoculum in only sand from salicylate 1	Sand	Salicylate	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324408 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324408 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324408	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324408_SAL-NOTH1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324408_sample_table.txt norm	GSM1324408_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	Salicylate	Lag phase
GSM1324407 1	cells recovered after 1h of inoculation in sand contaminated with dibenzofuran, precultured in dibenzofuran	Inoculum in sand+DBF from DBF	Inoculum in sand+DBF from DBF 3 [Hot-phenol extraction]	Sand	dibenzofuran cristals	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324407 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324407 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324407	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324407_DBF-DBF3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324407_sample_table.txt norm	GSM1324407_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Lag phase
GSM1324406 1	cells recovered after 1h of inoculation in sand contaminated with dibenzofuran, precultured in dibenzofuran	Inoculum in sand+DBF from DBF	Inoculum in sand+DBF from DBF 2 [Hot-phenol extraction]	Sand	dibenzofuran cristals	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324406 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324406 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324406	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324406_DBF-DBF2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324406_sample_table.txt norm	GSM1324406_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Lag phase
GSM1324405 1	cells recovered after 1h of inoculation in sand contaminated with dibenzofuran, precultured in dibenzofuran	Inoculum in sand+DBF from DBF	Inoculum in sand+DBF from DBF 1 [Hot-phenol extraction]	Sand	dibenzofuran cristals	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324405 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324405 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324405	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324405_DBF-DBF1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324405_sample_table.txt norm	GSM1324405_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Lag phase
GSM1324404 1	cells harvested from salicylate growing cultures	Control salicylate	Control salicylate 3	Liquid	Salicylate	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324404 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324404 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324404	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324404_ControlSAL3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324404_sample_table.txt norm	GSM1324404_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	Salicylate	Lag phase
GSM1324403 1	cells harvested from salicylate growing cultures	Control salicylate	Control salicylate 2	Liquid	Salicylate	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324403 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324403 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324403	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324403_ControlSAL2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324403_sample_table.txt norm	GSM1324403_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	Salicylate	Lag phase
GSM1324402 1	cells harvested from salicylate growing cultures	Control salicylate	Control salicylate 1	Liquid	Salicylate	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324402 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324402 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324402	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324402_ControlSAL1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324402_sample_table.txt norm	GSM1324402_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	Salicylate	Lag phase
GSM1324401 1	cells harvested from dibenzofuran growing cultures	Control Dibenzofuran	Control Dibenzofuran 3	Liquid	dibenzofuran cristals	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324401 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324401 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324401	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324401_ControlDBF3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324401_sample_table.txt norm	GSM1324401_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran cristals	Lag phase
GSM1324400 1	cells harvested from dibenzofuran growing cultures	Control Dibenzofuran	Control Dibenzofuran 2	Liquid	dibenzofuran cristals	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324400 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324400 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324400	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324400_ControlDBF2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324400_sample_table.txt norm	GSM1324400_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran cristals	Lag phase
GSM1324399 1	cells harvested from dibenzofuran growing cultures	Control Dibenzofuran	Control Dibenzofuran 1	Liquid	dibenzofuran cristals	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-9	ArrayExpress	P-GSE54816-10	ArrayExpress	GSM1324399 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324399 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324399	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324399_ControlDBF1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324399_sample_table.txt norm	GSM1324399_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran cristals	Lag phase
GSM1324398 1	Cells growing in exponential phase	Exponential cells in liquid culturesin saturated solution of DBF	Exponential cells in liquid culturesin saturated solution of DBF 3	Liquid	dibenzofuran saturated solution	Exponential phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-8	ArrayExpress	GSM1324398 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324398 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324398	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324398_WS-DBF3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324398_sample_table.txt norm	GSM1324398_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran saturated solution	Exponential phase
GSM1324397 1	Cells growing in exponential phase	Exponential cells in liquid culturesin saturated solution of DBF	Exponential cells in liquid culturesin saturated solution of DBF 2	Liquid	dibenzofuran saturated solution	Exponential phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-8	ArrayExpress	GSM1324397 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324397 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324397	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324397_WS-DBF2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324397_sample_table.txt norm	GSM1324397_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran saturated solution	Exponential phase
GSM1324396 1	Cells growing in exponential phase	Exponential cells in liquid culturesin saturated solution of DBF	Exponential cells in liquid culturesin saturated solution of DBF 1	Liquid	dibenzofuran saturated solution	Exponential phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-8	ArrayExpress	GSM1324396 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324396 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324396	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324396_WS-DBF.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324396_sample_table.txt norm	GSM1324396_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran saturated solution	Exponential phase
GSM1324395 1	Cells recovered after 40h of growth in sand contaminated with dibenzofuran	Stationaryl cells in sand contaminated with DBF	Stationaryl cells in sand contaminated with DBF 3	Sand	dibenzofuran cristals	Stationary phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324395 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324395 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324395	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324395_SAND-DBF-STAT3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324395_sample_table.txt norm	GSM1324395_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Stationary phase
GSM1324394 1	Cells recovered after 40h of growth in sand contaminated with dibenzofuran	Stationaryl cells in sand contaminated with DBF	Stationaryl cells in sand contaminated with DBF 2	Sand	dibenzofuran cristals	Stationary phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324394 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324394 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324394	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324394_SAND-DBF-STAT2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324394_sample_table.txt norm	GSM1324394_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Stationary phase
GSM1324393 1	Cells recovered after 40h of growth in sand contaminated with dibenzofuran	Stationaryl cells in sand contaminated with DBF	Stationaryl cells in sand contaminated with DBF 1	Sand	dibenzofuran cristals	Stationary phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324393 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324393 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324393	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324393_SAND-DBF-STAT1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324393_sample_table.txt norm	GSM1324393_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Stationary phase
GSM1324392 1	Cells recovered after 16h of growth in sand contaminated with dibenzofuran	Exponential cells in sand contaminated with DBF	Exponential cells in sand contaminated with DBF 3	Sand	dibenzofuran cristals	Exponential phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324392 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324392 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324392	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324392_SAND-DBF-EXP3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324392_sample_table.txt norm	GSM1324392_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Exponential phase
GSM1324391 1	Cells recovered after 16h of growth in sand contaminated with dibenzofuran	Exponential cells in sand contaminated with DBF	Exponential cells in sand contaminated with DBF 2	Sand	dibenzofuran cristals	Exponential phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324391 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324391 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324391	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324391_SAND-DBF-EXP2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324391_sample_table.txt norm	GSM1324391_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Exponential phase
GSM1324390 1	Cells recovered after 16h of growth in sand contaminated with dibenzofuran	Exponential cells in sand contaminated with DBF	Exponential cells in sand contaminated with DBF 1	Sand	dibenzofuran cristals	Exponential phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324390 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324390 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324390	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324390_SAND-DBF-EXP1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324390_sample_table.txt norm	GSM1324390_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Exponential phase
GSM1324389 1	cells harvested from dibenzofuran cultures at stationary phase (O.D. 0.9-1)	Stationary cells in liquid cultures with DBF crystals	Stationary cells in liquid cultures with DBF crystals 3	Liquid	dibenzofuran cristals	Stationary phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324389 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324389 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324389	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324389_LIQ-DBF-STAT3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324389_sample_table.txt norm	GSM1324389_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran cristals	Stationary phase
GSM1324388 1	cells harvested from dibenzofuran cultures at stationary phase (O.D. 0.9-1)	Stationary cells in liquid cultures with DBF crystals	Stationary cells in liquid cultures with DBF crystals 2	Liquid	dibenzofuran cristals	Stationary phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324388 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324388 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324388	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324388_LIQ-DBF-STAT2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324388_sample_table.txt norm	GSM1324388_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran cristals	Stationary phase
GSM1324387 1	cells harvested from dibenzofuran cultures at stationary phase (O.D. 0.9-1)	Stationary cells in liquid cultures with DBF crystals	Stationary cells in liquid cultures with DBF crystals 1	Liquid	dibenzofuran cristals	Stationary phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324387 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324387 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324387	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324387_LIQ-DBF-STAT1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324387_sample_table.txt norm	GSM1324387_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran cristals	Stationary phase
GSM1324386 1	cells harvested from dibenzofuran cultures at exponential phase (O.D. = 0.2-0.3)	Exponential cells in liquid cultures with DBF crystals	Exponential cells in liquid cultures with DBF crystals 3	Liquid	dibenzofuran cristals	Exponential phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324386 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324386 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324386	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324386_LIQ-DBF-EXP3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324386_sample_table.txt norm	GSM1324386_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran cristals	Exponential phase
GSM1324385 1	cells harvested from dibenzofuran cultures at exponential phase (O.D. = 0.2-0.3)	Exponential cells in liquid cultures with DBF crystals	Exponential cells in liquid cultures with DBF crystals 2	Liquid	dibenzofuran cristals	Exponential phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324385 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324385 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324385	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324385_LIQ-DBF-EXP2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324385_sample_table.txt norm	GSM1324385_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran cristals	Exponential phase
GSM1324384 1	cells harvested from dibenzofuran cultures at exponential phase (O.D. = 0.2-0.3)	Exponential cells in liquid cultures with DBF crystals	Exponential cells in liquid cultures with DBF crystals 1	Liquid	dibenzofuran cristals	Exponential phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324384 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324384 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324384	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324384_LIQ-DBF-EXP1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324384_sample_table.txt norm	GSM1324384_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Liquid	dibenzofuran cristals	Exponential phase
GSM1324383 1	cells recovered after 1h of inoculation in sand contaminated with dibenzofuran, precultured in dibenzofuran	Inoculum in sand+DBF from DBF	Inoculum in sand+DBF from DBF 3	Sand	dibenzofuran cristals	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324383 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324383 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324383	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324383_DBF-DBF3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324383_sample_table.txt norm	GSM1324383_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Lag phase
GSM1324382 1	cells recovered after 1h of inoculation in sand contaminated with dibenzofuran, precultured in dibenzofuran	Inoculum in sand+DBF from DBF	Inoculum in sand+DBF from DBF 2	Sand	dibenzofuran cristals	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324382 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324382 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324382	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324382_DBF-DBF2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324382_sample_table.txt norm	GSM1324382_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Lag phase
GSM1324381 1	cells recovered after 1h of inoculation in sand contaminated with dibenzofuran, precultured in dibenzofuran	Inoculum in sand+DBF from DBF	Inoculum in sand+DBF from DBF 1	Sand	dibenzofuran cristals	Lag phase	Sphingomonas wittichii RW1	EFO	http://purl.obolibrary.org/obo/NCBITaxon_392499	P-GSE54816-3	ArrayExpress	P-GSE54816-2	ArrayExpress	P-GSE54816-4	ArrayExpress	GSM1324381 extract 1	total RNA	P-GSE54816-5	ArrayExpress	GSM1324381 LE 1	Cy3	P-GSE54816-6	ArrayExpress	GSM1324381	A-GEOD-15452	ArrayExpress	array assay	P-GSE54816-7	ArrayExpress	GSM1324381_DBF-DBF1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.raw.1.zip	P-GSE54816-1	ArrayExpress	GSM1324381_sample_table.txt norm	GSM1324381_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54816/E-GEOD-54816.processed.1.zip	Sand	dibenzofuran cristals	Lag phase