Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [cell line] Term Source REF Term Accession Number Characteristics [organism] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [treatment] GSM1282476 1 HDFC, serum HDFC, serum HDFC, serum Repeat 5 4_5 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282476 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282476 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282476 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282476_US45103093_251485062173_S01_GE1-v5_95_Feb07_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282476_sample_table.txt norm GSM1282476_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, serum GSM1282475 1 Gelatin, serum Gelatin, serum Gelatin, serum Repeat 5 3_5 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282475 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282475 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282475 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282475_US45103093_251485062173_S01_GE1-v5_95_Feb07_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282475_sample_table.txt norm GSM1282475_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, serum GSM1282474 1 HDFC, no serum HDFC, no serum HDFC, no serum Repeat 5 2_5 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282474 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282474 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282474 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282474_US45103093_251485062173_S01_GE1-v5_95_Feb07_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282474_sample_table.txt norm GSM1282474_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, no serum GSM1282473 1 Gelatin, no serum Gelatin, no serum Gelatin, no serum Repeat 5 1_5 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282473 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282473 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282473 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282473_US45103093_251485062173_S01_GE1-v5_95_Feb07_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282473_sample_table.txt norm GSM1282473_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, no serum GSM1282472 1 HDFC, serum HDFC, serum HDFC, serum Repeat 4 4_4 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282472 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282472 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282472 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282472_US45103093_251485056224_S01_GE1-v5_95_Feb07_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282472_sample_table.txt norm GSM1282472_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, serum GSM1282471 1 Gelatin, serum Gelatin, serum Gelatin, serum Repeat 4 3_4 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282471 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282471 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282471 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282471_US45103093_251485056224_S01_GE1-v5_95_Feb07_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282471_sample_table.txt norm GSM1282471_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, serum GSM1282470 1 HDFC, no serum HDFC, no serum HDFC, no serum Repeat 4 2_4 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282470 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282470 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282470 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282470_US45103093_251485056224_S01_GE1-v5_95_Feb07_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282470_sample_table.txt norm GSM1282470_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, no serum GSM1282469 1 Gelatin, no serum Gelatin, no serum Gelatin, no serum Repeat 4 1_4 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282469 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282469 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282469 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282469_US45103093_251485056224_S01_GE1-v5_95_Feb07_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282469_sample_table.txt norm GSM1282469_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, no serum GSM1282468 1 HDFC, serum HDFC, serum HDFC, serum Repeat 3 4_3 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282468 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282468 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282468 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282468_US45103093_251485056227_S01_GE1-v5_95_Feb07_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282468_sample_table.txt norm GSM1282468_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, serum GSM1282467 1 Gelatin, serum Gelatin, serum Gelatin, serum Repeat 3 3_3 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282467 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282467 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282467 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282467_US45103093_251485056227_S01_GE1-v5_95_Feb07_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282467_sample_table.txt norm GSM1282467_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, serum GSM1282466 1 HDFC, no serum HDFC, no serum HDFC, no serum Repeat 3 2_3 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282466 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282466 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282466 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282466_US45103093_251485056227_S01_GE1-v5_95_Feb07_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282466_sample_table.txt norm GSM1282466_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, no serum GSM1282465 1 Gelatin, no serum Gelatin, no serum Gelatin, no serum Repeat 3 1_3 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282465 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282465 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282465 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282465_US45103093_251485056227_S01_GE1-v5_95_Feb07_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282465_sample_table.txt norm GSM1282465_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, no serum GSM1282464 1 HDFC, serum HDFC, serum HDFC, serum Repeat 2 4_2 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282464 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282464 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282464 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282464_US45103093_251485050133_S01_GE1-v5_95_Feb07_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282464_sample_table.txt norm GSM1282464_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, serum GSM1282463 1 Gelatin, serum Gelatin, serum Gelatin, serum Repeat 2 3_2 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282463 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282463 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282463 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282463_US45103093_251485050133_S01_GE1-v5_95_Feb07_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282463_sample_table.txt norm GSM1282463_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, serum GSM1282462 1 HDFC, no serum HDFC, no serum HDFC, no serum Repeat 2 2_2 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282462 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282462 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282462 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282462_US45103093_251485050133_S01_GE1-v5_95_Feb07_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282462_sample_table.txt norm GSM1282462_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, no serum GSM1282461 1 Gelatin, no serum Gelatin, no serum Gelatin, no serum Repeat 2 1_2 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282461 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282461 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282461 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282461_US45103093_251485050133_S01_GE1-v5_95_Feb07_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282461_sample_table.txt norm GSM1282461_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, no serum GSM1282460 1 HDFC, serum HDFC, serum HDFC, serum Repeat 1 4_1 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282460 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282460 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282460 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282460_US45103093_251485050131_S01_GE1-v5_95_Feb07_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282460_sample_table.txt norm GSM1282460_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, serum GSM1282459 1 Gelatin, serum Gelatin, serum Gelatin, serum Repeat 1 3_1 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282459 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282459 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282459 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282459_US45103093_251485050131_S01_GE1-v5_95_Feb07_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282459_sample_table.txt norm GSM1282459_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, serum GSM1282458 1 HDFC, no serum HDFC, no serum HDFC, no serum Repeat 1 2_1 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282458 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282458 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282458 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282458_US45103093_251485050131_S01_GE1-v5_95_Feb07_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282458_sample_table.txt norm GSM1282458_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip HDFC, no serum GSM1282457 1 Gelatin, no serum Gelatin, no serum Gelatin, no serum Repeat 1 1_1 MDA-MB-231 EFO EFO_0001209 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE53104-2 ArrayExpress P-GSE53104-3 ArrayExpress P-GSE53104-4 ArrayExpress GSM1282457 extract 1 total RNA P-GSE53104-5 ArrayExpress GSM1282457 LE 1 Cy3 P-GSE53104-6 ArrayExpress GSM1282457 A-AGIL-28 ArrayExpress array assay P-GSE53104-7 ArrayExpress GSM1282457_US45103093_251485050131_S01_GE1-v5_95_Feb07_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.raw.1.zip P-GSE53104-1 ArrayExpress GSM1282457_sample_table.txt norm GSM1282457_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53104/E-GEOD-53104.processed.1.zip Gelatin, no serum