Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [transfection]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [TRANSFECTION]
GSM1257861 2	Stable Oct4-EGFP or Nr5a2-EGFP gene transfected ZHBTc4 ES cells, Monoclonal cell line, Doxycyclin treatment before harvest	ZHBTc4-Nr5a2-EGFP clone #26	ZHBTc4-Oct4-EGFP vs Nr5a2-EGFP	ZHBTc4 ES cell	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	pCAG-IP/Nr5a2-EGFP	P-GSE52034-2	ArrayExpress	P-GSE52034-3	ArrayExpress	P-GSE52034-4	ArrayExpress	GSM1257861 extract 2	total RNA	P-GSE52034-5	ArrayExpress	GSM1257861 LE 2	Cy5	P-GSE52034-6	ArrayExpress	GSM1257861	A-GEOD-11202	ArrayExpress	array assay	P-GSE52034-7	ArrayExpress	GSM1257861_moct4_Z_vs._Nr5A_Z_252665510884_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-52034/E-GEOD-52034.raw.1.zip	P-GSE52034-1	ArrayExpress	GSM1257861_sample_table.txt norm	GSM1257861_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-52034/E-GEOD-52034.processed.1.zip	pCAG-IP/Nr5a2-EGFP
GSM1257861 1	Stable Oct4-EGFP or Nr5a2-EGFP gene transfected ZHBTc4 ES cells, Monoclonal cell line, Doxycyclin treatment before harvest	ZHBTc4-Oct4-EGFP clone #9	ZHBTc4-Oct4-EGFP vs Nr5a2-EGFP	ZHBTc4 ES cell	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	pCAG-IP/Oct4-EGFP	P-GSE52034-2	ArrayExpress	P-GSE52034-3	ArrayExpress	P-GSE52034-4	ArrayExpress	GSM1257861 extract 1	total RNA	P-GSE52034-5	ArrayExpress	GSM1257861 LE 1	Cy3	P-GSE52034-6	ArrayExpress	GSM1257861	A-GEOD-11202	ArrayExpress	array assay	P-GSE52034-7	ArrayExpress	GSM1257861_moct4_Z_vs._Nr5A_Z_252665510884_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-52034/E-GEOD-52034.raw.1.zip	P-GSE52034-1	ArrayExpress	GSM1257861_sample_table.txt norm	GSM1257861_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-52034/E-GEOD-52034.processed.1.zip	pCAG-IP/Oct4-EGFP
GSM1257860 1	Stable EGFP or Nr5a2-EGFP gene transfected ZHBTc4 ES cells, Monoclonal cell line, Doxycyclin treatment before harvest	ZHBTc4-EGFP clone #2-5	ZHBTc4-EGFP vs Nr5a2-EGFP	ZHBTc4 ES cell	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	pCAG-IP/EGFP	P-GSE52034-2	ArrayExpress	P-GSE52034-3	ArrayExpress	P-GSE52034-4	ArrayExpress	GSM1257860 extract 1	total RNA	P-GSE52034-5	ArrayExpress	GSM1257860 LE 1	Cy3	P-GSE52034-6	ArrayExpress	GSM1257860	A-GEOD-11202	ArrayExpress	array assay	P-GSE52034-7	ArrayExpress	GSM1257860_GFP_Z_vs._Nr5A_Z_252665510884_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-52034/E-GEOD-52034.raw.1.zip	P-GSE52034-1	ArrayExpress	GSM1257860_sample_table.txt norm	GSM1257860_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-52034/E-GEOD-52034.processed.1.zip	pCAG-IP/EGFP
GSM1257860 2	Stable EGFP or Nr5a2-EGFP gene transfected ZHBTc4 ES cells, Monoclonal cell line, Doxycyclin treatment before harvest	ZHBTc4-Nr5a2-EGFP clone #26	ZHBTc4-EGFP vs Nr5a2-EGFP	ZHBTc4 ES cell	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	pCAG-IP/Nr5a2-EGFP	P-GSE52034-2	ArrayExpress	P-GSE52034-3	ArrayExpress	P-GSE52034-4	ArrayExpress	GSM1257860 extract 2	total RNA	P-GSE52034-5	ArrayExpress	GSM1257860 LE 2	Cy5	P-GSE52034-6	ArrayExpress	GSM1257860	A-GEOD-11202	ArrayExpress	array assay	P-GSE52034-7	ArrayExpress	GSM1257860_GFP_Z_vs._Nr5A_Z_252665510884_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-52034/E-GEOD-52034.raw.1.zip	P-GSE52034-1	ArrayExpress	GSM1257860_sample_table.txt norm	GSM1257860_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-52034/E-GEOD-52034.processed.1.zip	pCAG-IP/Nr5a2-EGFP