Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [affinity purification method]	Characteristics [cell line]	Characteristics [cell type]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [transfectant]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [AFFINITY PURIFICATION METHOD]	FactorValue [TRANSFECTANT]
GSM1254870 1	  	NCCIT human cells	NCCIT pluripotent input	n/a	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254870 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254870	SRX371324	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254870_NCCIT_input.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.2.zip	n/a	none
GSM1254870 1	  	NCCIT human cells	NCCIT pluripotent input	n/a	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254870 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254870	SRX371324	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254870_NCCIT_input.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.3.zip	n/a	none
GSM1254869 1	  	NCCIT human cells treated with a control non-targeting siRNA	NCCIT siNTC input	n/a	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	control siRNA	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254869 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254869	SRX371323	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254869_NTC_input.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.4.zip	n/a	control siRNA
GSM1254869 1	  	NCCIT human cells treated with a control non-targeting siRNA	NCCIT siNTC input	n/a	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	control siRNA	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254869 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254869	SRX371323	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254869_NTC_input.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.5.zip	n/a	control siRNA
GSM1254868 1	reanalysis of GSM952552	NCCIT human cells differentiated with retinoic acid for 7 days	NCCIT 7-day differentiated 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254868 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254868	SRX371322	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254868_RA_5mC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.5.zip	MethylMagnet mCpG DNA isolation (Ribomed)	none
GSM1254868 1	reanalysis of GSM952552	NCCIT human cells differentiated with retinoic acid for 7 days	NCCIT 7-day differentiated 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254868 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254868	SRX371322	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254868_RA_5mC-RA_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.5.zip	MethylMagnet mCpG DNA isolation (Ribomed)	none
GSM1254868 1	reanalysis of GSM952552	NCCIT human cells differentiated with retinoic acid for 7 days	NCCIT 7-day differentiated 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254868 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254868	SRX371322	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254868_RA_5mC-NCCIT_5mC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.5.zip	MethylMagnet mCpG DNA isolation (Ribomed)	none
GSM1254867 1	reanalysis of GSM952551	NCCIT human cells	NCCIT pluripotent 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254867 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254867	SRX371321	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254867_NCCIT_5mC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.5.zip	MethylMagnet mCpG DNA isolation (Ribomed)	none
GSM1254867 1	reanalysis of GSM952551	NCCIT human cells	NCCIT pluripotent 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254867 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254867	SRX371321	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254867_NCCIT_5mC-NCCIT_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.5.zip	MethylMagnet mCpG DNA isolation (Ribomed)	none
GSM1254866 1	  	NCCIT human cells treated with a control non-targeting siRNA	NCCIT siNTC 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	control siRNA	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254866 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254866	SRX371320	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254866_NTC_5mC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.5.zip	MethylMagnet mCpG DNA isolation (Ribomed)	control siRNA
GSM1254866 1	  	NCCIT human cells treated with a control non-targeting siRNA	NCCIT siNTC 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	control siRNA	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254866 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254866	SRX371320	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254866_NTC_5mC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.5.zip	MethylMagnet mCpG DNA isolation (Ribomed)	control siRNA
GSM1254866 1	  	NCCIT human cells treated with a control non-targeting siRNA	NCCIT siNTC 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	control siRNA	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254866 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254866	SRX371320	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254866_NTC_5mC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.6.zip	MethylMagnet mCpG DNA isolation (Ribomed)	control siRNA
GSM1254866 1	  	NCCIT human cells treated with a control non-targeting siRNA	NCCIT siNTC 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	control siRNA	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254866 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254866	SRX371320	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254866_NTC_5mC-NTC_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.6.zip	MethylMagnet mCpG DNA isolation (Ribomed)	control siRNA
GSM1254865 1	  	NCCIT human cells depleted of TET3 by siRNA	NCCIT siTET3 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET3 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254865 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254865	SRX371319	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254865_TET3_5mC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.6.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET3 transcript
GSM1254865 1	  	NCCIT human cells depleted of TET3 by siRNA	NCCIT siTET3 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET3 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254865 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254865	SRX371319	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254865_TET3_5mC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.7.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET3 transcript
GSM1254865 1	  	NCCIT human cells depleted of TET3 by siRNA	NCCIT siTET3 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET3 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254865 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254865	SRX371319	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254865_TET3_5mC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.8.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET3 transcript
GSM1254865 1	  	NCCIT human cells depleted of TET3 by siRNA	NCCIT siTET3 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET3 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254865 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254865	SRX371319	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254865_TET3_5mC-TET3_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.8.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET3 transcript
GSM1254865 1	  	NCCIT human cells depleted of TET3 by siRNA	NCCIT siTET3 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET3 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254865 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254865	SRX371319	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254865_TET3_5mC-NTC_5mC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.8.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET3 transcript
GSM1254864 1	  	NCCIT human cells depleted of TET2 by siRNA	NCCIT siTET2 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET2 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254864 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254864	SRX371318	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254864_TET2_5mC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.8.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET2 transcript
GSM1254864 1	  	NCCIT human cells depleted of TET2 by siRNA	NCCIT siTET2 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET2 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254864 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254864	SRX371318	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254864_TET2_5mC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.8.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET2 transcript
GSM1254864 1	  	NCCIT human cells depleted of TET2 by siRNA	NCCIT siTET2 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET2 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254864 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254864	SRX371318	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254864_TET2_5mC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.9.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET2 transcript
GSM1254864 1	  	NCCIT human cells depleted of TET2 by siRNA	NCCIT siTET2 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET2 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254864 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254864	SRX371318	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254864_TET2_5mC-TET2_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.9.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET2 transcript
GSM1254864 1	  	NCCIT human cells depleted of TET2 by siRNA	NCCIT siTET2 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET2 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254864 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254864	SRX371318	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254864_TET2_5mC-NTC_5mC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.9.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET2 transcript
GSM1254863 1	  	NCCIT human cells depleted of TET1 by siRNA	NCCIT siTET1 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET1 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254863 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254863	SRX371317	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254863_TET1_5mC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.9.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET1 transcript
GSM1254863 1	  	NCCIT human cells depleted of TET1 by siRNA	NCCIT siTET1 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET1 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254863 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254863	SRX371317	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254863_TET1_5mC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.10.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET1 transcript
GSM1254863 1	  	NCCIT human cells depleted of TET1 by siRNA	NCCIT siTET1 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET1 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254863 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254863	SRX371317	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254863_TET1_5mC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.11.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET1 transcript
GSM1254863 1	  	NCCIT human cells depleted of TET1 by siRNA	NCCIT siTET1 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET1 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254863 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254863	SRX371317	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254863_TET1_5mC-TET1_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.11.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET1 transcript
GSM1254863 1	  	NCCIT human cells depleted of TET1 by siRNA	NCCIT siTET1 5mC-seq	MethylMagnet mCpG DNA isolation (Ribomed)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET1 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254863 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254863	SRX371317	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254863_TET1_5mC-NTC_5mC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.11.zip	MethylMagnet mCpG DNA isolation (Ribomed)	siRNA against TET1 transcript
GSM1254862 1	  	NCCIT human cells differentiated with retinoic acid for 7 days	NCCIT 7-day differentiated 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254862 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254862	SRX371316	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254862_RA_5hmC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.11.zip	Hydroxymethyl Collector (Active Motif)	none
GSM1254862 1	  	NCCIT human cells differentiated with retinoic acid for 7 days	NCCIT 7-day differentiated 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254862 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254862	SRX371316	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254862_RA_5hmC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.11.zip	Hydroxymethyl Collector (Active Motif)	none
GSM1254862 1	  	NCCIT human cells differentiated with retinoic acid for 7 days	NCCIT 7-day differentiated 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254862 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254862	SRX371316	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254862_RA_5hmC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.12.zip	Hydroxymethyl Collector (Active Motif)	none
GSM1254862 1	  	NCCIT human cells differentiated with retinoic acid for 7 days	NCCIT 7-day differentiated 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254862 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254862	SRX371316	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254862_RA_5hmC-NCCIT_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.12.zip	Hydroxymethyl Collector (Active Motif)	none
GSM1254861 1	  	NCCIT human cells	NCCIT pluripotent 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254861 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254861	SRX371315	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254861_NCCIT_5hmC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.12.zip	Hydroxymethyl Collector (Active Motif)	none
GSM1254861 1	  	NCCIT human cells	NCCIT pluripotent 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254861 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254861	SRX371315	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254861_NCCIT_5hmC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.13.zip	Hydroxymethyl Collector (Active Motif)	none
GSM1254861 1	  	NCCIT human cells	NCCIT pluripotent 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254861 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254861	SRX371315	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254861_NCCIT_5hmC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.14.zip	Hydroxymethyl Collector (Active Motif)	none
GSM1254860 1	  	NCCIT human cells treated with a control non-targeting siRNA	NCCIT siNTC 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	control siRNA	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254860 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254860	SRX371314	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254860_NTC_5hmC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.14.zip	Hydroxymethyl Collector (Active Motif)	control siRNA
GSM1254860 1	  	NCCIT human cells treated with a control non-targeting siRNA	NCCIT siNTC 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	control siRNA	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254860 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254860	SRX371314	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254860_NTC_5hmC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.14.zip	Hydroxymethyl Collector (Active Motif)	control siRNA
GSM1254860 1	  	NCCIT human cells treated with a control non-targeting siRNA	NCCIT siNTC 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	control siRNA	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254860 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254860	SRX371314	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254860_NTC_5hmC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.15.zip	Hydroxymethyl Collector (Active Motif)	control siRNA
GSM1254859 1	  	NCCIT human cells depleted of TET3 by siRNA	NCCIT siTET3 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET3 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254859 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254859	SRX371313	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254859_TET3_5hmC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.15.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET3 transcript
GSM1254859 1	  	NCCIT human cells depleted of TET3 by siRNA	NCCIT siTET3 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET3 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254859 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254859	SRX371313	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254859_TET3_5hmC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.15.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET3 transcript
GSM1254859 1	  	NCCIT human cells depleted of TET3 by siRNA	NCCIT siTET3 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET3 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254859 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254859	SRX371313	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254859_TET3_5hmC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.16.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET3 transcript
GSM1254859 1	  	NCCIT human cells depleted of TET3 by siRNA	NCCIT siTET3 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET3 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254859 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254859	SRX371313	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254859_TET3_5hmC-NTC_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.16.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET3 transcript
GSM1254858 1	  	NCCIT human cells depleted of TET2 by siRNA	NCCIT siTET2 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET2 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254858 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254858	SRX371312	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254858_TET2_5hmC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.16.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET2 transcript
GSM1254858 1	  	NCCIT human cells depleted of TET2 by siRNA	NCCIT siTET2 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET2 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254858 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254858	SRX371312	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254858_TET2_5hmC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.17.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET2 transcript
GSM1254858 1	  	NCCIT human cells depleted of TET2 by siRNA	NCCIT siTET2 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET2 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254858 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254858	SRX371312	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254858_TET2_5hmC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.18.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET2 transcript
GSM1254858 1	  	NCCIT human cells depleted of TET2 by siRNA	NCCIT siTET2 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET2 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254858 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254858	SRX371312	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254858_TET2_5hmC-NTC_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.18.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET2 transcript
GSM1254857 1	  	NCCIT human cells depleted of TET1 by siRNA	NCCIT siTET1 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET1 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254857 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254857	SRX371311	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254857_TET1_5hmC.sicer.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.18.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET1 transcript
GSM1254857 1	  	NCCIT human cells depleted of TET1 by siRNA	NCCIT siTET1 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET1 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254857 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254857	SRX371311	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254857_TET1_5hmC.bigwig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.18.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET1 transcript
GSM1254857 1	  	NCCIT human cells depleted of TET1 by siRNA	NCCIT siTET1 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET1 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254857 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254857	SRX371311	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254857_TET1_5hmC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.19.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET1 transcript
GSM1254857 1	  	NCCIT human cells depleted of TET1 by siRNA	NCCIT siTET1 5hmC-seq	Hydroxymethyl Collector (Active Motif)	NCCIT	embryonic carcinoma	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	siRNA against TET1 transcript	P-GSE51903-2	ArrayExpress	P-GSE51903-7	ArrayExpress	GSM1254857 extract 1	Illumina HiSeq 2000	MBD2 protein methyl-CpG binding domain	genomic	MBD-Seq	genomic DNA	GSM1254857	SRX371311	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	GSM1254857_TET1_5hmC-NTC_5hmC.sicerdiff.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51903/E-GEOD-51903.processed.19.zip	Hydroxymethyl Collector (Active Motif)	siRNA against TET1 transcript