Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell type]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]
GSM1250714 1	SAMPLE 4	TAMs sorted from imatinib treated tumors	TAMs sorted from imatinib treated tumors, biological replicate#2	freshly sorted tumor associated macrophages (TAMs)	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	gastrointestinal stromal tumor (GIST)	P-GSE51698-2	ArrayExpress	P-GSE51698-3	ArrayExpress	P-GSE51698-4	ArrayExpress	GSM1250714 extract 1	total RNA	P-GSE51698-5	ArrayExpress	GSM1250714 LE 1	biotin	P-GSE51698-6	ArrayExpress	GSM1250714	A-AFFY-36	ArrayExpress	array assay	P-GSE51698-7	ArrayExpress	GSM1250714_MC4_TAM_imat_2_Mouse430A_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51698/E-GEOD-51698.raw.1.zip	P-GSE51698-1	ArrayExpress	GSM1250714_sample_table.txt norm	GSM1250714_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51698/E-GEOD-51698.processed.1.zip
GSM1250713 1	SAMPLE 3	TAMs sorted from imatinib treated tumors	TAMs sorted from imatinib treated tumors, biological replicate#1	freshly sorted tumor associated macrophages (TAMs)	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	gastrointestinal stromal tumor (GIST)	P-GSE51698-2	ArrayExpress	P-GSE51698-3	ArrayExpress	P-GSE51698-4	ArrayExpress	GSM1250713 extract 1	total RNA	P-GSE51698-5	ArrayExpress	GSM1250713 LE 1	biotin	P-GSE51698-6	ArrayExpress	GSM1250713	A-AFFY-36	ArrayExpress	array assay	P-GSE51698-7	ArrayExpress	GSM1250713_MC4_TAM_imat_1_Mouse430A_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51698/E-GEOD-51698.raw.1.zip	P-GSE51698-1	ArrayExpress	GSM1250713_sample_table.txt norm	GSM1250713_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51698/E-GEOD-51698.processed.1.zip
GSM1250712 1	SAMPLE 2	TAMs sorted from vehicle control tumors	TAMs sorted from vehicle control tumors, biological replicate#2	freshly sorted tumor associated macrophages (TAMs)	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	gastrointestinal stromal tumor (GIST)	P-GSE51698-2	ArrayExpress	P-GSE51698-3	ArrayExpress	P-GSE51698-4	ArrayExpress	GSM1250712 extract 1	total RNA	P-GSE51698-5	ArrayExpress	GSM1250712 LE 1	biotin	P-GSE51698-6	ArrayExpress	GSM1250712	A-AFFY-36	ArrayExpress	array assay	P-GSE51698-7	ArrayExpress	GSM1250712_MC3_DVC_TAM_ctr_2_Mouse430A_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51698/E-GEOD-51698.raw.1.zip	P-GSE51698-1	ArrayExpress	GSM1250712_sample_table.txt norm	GSM1250712_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51698/E-GEOD-51698.processed.1.zip
GSM1250711 1	SAMPLE 1	TAMs sorted from vehicle control tumors	TAMs sorted from vehicle control tumors, biological replicate#1	freshly sorted tumor associated macrophages (TAMs)	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	gastrointestinal stromal tumor (GIST)	P-GSE51698-2	ArrayExpress	P-GSE51698-3	ArrayExpress	P-GSE51698-4	ArrayExpress	GSM1250711 extract 1	total RNA	P-GSE51698-5	ArrayExpress	GSM1250711 LE 1	biotin	P-GSE51698-6	ArrayExpress	GSM1250711	A-AFFY-36	ArrayExpress	array assay	P-GSE51698-7	ArrayExpress	GSM1250711_MC3_DVC_TAM_ctr_1_Mouse430A_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51698/E-GEOD-51698.raw.1.zip	P-GSE51698-1	ArrayExpress	GSM1250711_sample_table.txt norm	GSM1250711_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-51698/E-GEOD-51698.processed.1.zip