Source Name Comment [Sample_source_name] Comment [Sample_title] Characteristics [ecotype] Term Source REF Term Accession Number Characteristics [genotype] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [ECOTYPE] Term Source REF Term Accession Number FactorValue [GENOTYPE] GSM1227192 1 top1a-2 smallRNAseq top1a-2 smallRNAseq Landsberg erecta EFO EFO_0005154 top1a-2 Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-3 ArrayExpress GSM1227192 extract 1 Illumina HiSeq 2000 size fractionation transcriptomic RNA-Seq total RNA GSM1227192 SRX347407 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1227192_top1a-2_sRNAseq.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.1.zip Landsberg erecta EFO EFO_0005154 top1a-2 GSM1227191 1 Ler smallRNAseq Ler smallRNAseq Landsberg erecta EFO EFO_0005154 wild type Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-3 ArrayExpress GSM1227191 extract 1 Illumina HiSeq 2000 size fractionation transcriptomic RNA-Seq total RNA GSM1227191 SRX347406 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1227191_Ler_sRNAseq.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.1.zip Landsberg erecta EFO EFO_0005154 wild type GSM1227190 1 nrpe1-11 smallRNAseq nrpe1-11 smallRNAseq Columbia nrpe1-11 Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-3 ArrayExpress GSM1227190 extract 1 Illumina HiSeq 2000 size fractionation transcriptomic RNA-Seq total RNA GSM1227190 SRX347405 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1227190_nrpe1-11_sRNAseq.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.1.zip Columbia nrpe1-11 GSM1227189 1 sde4-3 smallRNAseq sde4-3 smallRNAseq Columbia sde4-3 Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-3 ArrayExpress GSM1227189 extract 1 Illumina HiSeq 2000 size fractionation transcriptomic RNA-Seq total RNA GSM1227189 SRX347404 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1227189_sde4-3_sRNAseq.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.1.zip Columbia sde4-3 GSM1227188 1 Col smallRNAseq Col smallRNAseq Columbia wild type Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-3 ArrayExpress GSM1227188 extract 1 Illumina HiSeq 2000 size fractionation transcriptomic RNA-Seq total RNA GSM1227188 SRX347403 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1227188_Col_sRNAseq.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.1.zip Columbia wild type GSM1226515 1 top1a-2 A Bsseq top1a-2 A Bsseq Landsberg erecta EFO EFO_0005154 top1a-2 Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226515 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226515 SRX347191 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226515_top1a-2_A.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.2.zip Landsberg erecta EFO EFO_0005154 top1a-2 GSM1226514 1 Ler A Bsseq Ler A Bsseq Landsberg erecta EFO EFO_0005154 wild type Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226514 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226514 SRX347190 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226514_Ler_A.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.3.zip Landsberg erecta EFO EFO_0005154 wild type GSM1226513 1 nrpe1-11 C Bsseq nrpe1-11 C Bsseq Columbia nrpe1-11 Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226513 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226513 SRX347189 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226513_nrpe1-11_C.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.4.zip Columbia nrpe1-11 GSM1226512 1 nrpe1-11 B Bsseq nrpe1-11 B Bsseq Columbia nrpe1-11 Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226512 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226512 SRX347188 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226512_nrpe1-11_B.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.5.zip Columbia nrpe1-11 GSM1226511 1 sde4-3 C Bsseq sde4-3 C Bsseq Columbia sde4-3 Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226511 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226511 SRX347187 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226511_sde4-3_C.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.6.zip Columbia sde4-3 GSM1226510 1 sde4-3 B Bsseq sde4-3 B Bsseq Columbia sde4-3 Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226510 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226510 SRX347186 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226510_sde4-3_B.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.7.zip Columbia sde4-3 GSM1226509 1 top1a-7 A BSseq top1a-7 A BSseq Columbia top1a-7 Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226509 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226509 SRX347185 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226509_top1a-7_A.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.8.zip Columbia top1a-7 GSM1226508 1 Col C BSseq Col C BSseq Columbia wild type Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226508 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226508 SRX347184 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226508_Col_C.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.9.zip Columbia wild type GSM1226507 1 Col B BSseq Col B BSseq Columbia wild type Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226507 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226507 SRX347183 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226507_Col_B.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.10.zip Columbia wild type GSM1226506 1 Col A BSseq Col A BSseq Columbia wild type Arabidopsis thaliana EFO http://purl.obolibrary.org/obo/NCBITaxon_3702 ten-day-old seedlings P-GSE50720-1 ArrayExpress P-GSE50720-2 ArrayExpress GSM1226506 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1226506 SRX347182 Illumina HiSeq 2000 (Arabidopsis thaliana) sequencing assay GSM1226506_Col_A.methy.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50720/E-GEOD-50720.processed.11.zip Columbia wild type