Source Name	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]
GSM1210415 1	nac mutant S. flexneri, 4 h post infection	nac rep3	nac	Shigella flexneri	EFO	http://purl.obolibrary.org/obo/NCBITaxon_623	P-GSE49939-2	ArrayExpress	P-GSE49939-3	ArrayExpress	GSM1210415 extract 1	total RNA	P-GSE49939-4	ArrayExpress	GSM1210415 LE 1	Cy5	P-GSE49939-5	ArrayExpress	GSM1210415	A-GEOD-14649	ArrayExpress	array assay	P-GSE49939-6	ArrayExpress	GSM1210415_424874_A01_2013-02-08_635.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.raw.1.zip	P-GSE49939-1	ArrayExpress	GSM1210415_sample_table.txt norm	GSM1210415_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.processed.1.zip	nac
GSM1210414 1	nac mutant S. flexneri, 4 h post infection	nac rep2	nac	Shigella flexneri	EFO	http://purl.obolibrary.org/obo/NCBITaxon_623	P-GSE49939-2	ArrayExpress	P-GSE49939-3	ArrayExpress	GSM1210414 extract 1	total RNA	P-GSE49939-4	ArrayExpress	GSM1210414 LE 1	Cy5	P-GSE49939-5	ArrayExpress	GSM1210414	A-GEOD-14649	ArrayExpress	array assay	P-GSE49939-6	ArrayExpress	GSM1210414_424869_A01_2013-02-08_635.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.raw.1.zip	P-GSE49939-1	ArrayExpress	GSM1210414_sample_table.txt norm	GSM1210414_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.processed.1.zip	nac
GSM1210413 1	nac mutant S. flexneri, 4 h post infection	nac rep1	nac	Shigella flexneri	EFO	http://purl.obolibrary.org/obo/NCBITaxon_623	P-GSE49939-2	ArrayExpress	P-GSE49939-3	ArrayExpress	GSM1210413 extract 1	total RNA	P-GSE49939-4	ArrayExpress	GSM1210413 LE 1	Cy5	P-GSE49939-5	ArrayExpress	GSM1210413	A-GEOD-14649	ArrayExpress	array assay	P-GSE49939-6	ArrayExpress	GSM1210413_401058_A04_2013-02-08_635.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.raw.1.zip	P-GSE49939-1	ArrayExpress	GSM1210413_sample_table.txt norm	GSM1210413_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.processed.1.zip	nac
GSM1210412 1	ntrBC mutant S. flexneri, 4 h post infection	ntrBC rep3	ntrBC	Shigella flexneri	EFO	http://purl.obolibrary.org/obo/NCBITaxon_623	P-GSE49939-2	ArrayExpress	P-GSE49939-3	ArrayExpress	GSM1210412 extract 1	total RNA	P-GSE49939-4	ArrayExpress	GSM1210412 LE 1	Cy5	P-GSE49939-5	ArrayExpress	GSM1210412	A-GEOD-14649	ArrayExpress	array assay	P-GSE49939-6	ArrayExpress	GSM1210412_424874_A02_2013-02-08_635.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.raw.1.zip	P-GSE49939-1	ArrayExpress	GSM1210412_sample_table.txt norm	GSM1210412_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.processed.1.zip	ntrBC
GSM1210411 1	ntrBC mutant S. flexneri, 4 h post infection	ntrBC rep2	ntrBC	Shigella flexneri	EFO	http://purl.obolibrary.org/obo/NCBITaxon_623	P-GSE49939-2	ArrayExpress	P-GSE49939-3	ArrayExpress	GSM1210411 extract 1	total RNA	P-GSE49939-4	ArrayExpress	GSM1210411 LE 1	Cy5	P-GSE49939-5	ArrayExpress	GSM1210411	A-GEOD-14649	ArrayExpress	array assay	P-GSE49939-6	ArrayExpress	GSM1210411_424869_A02_2013-02-08_635.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.raw.1.zip	P-GSE49939-1	ArrayExpress	GSM1210411_sample_table.txt norm	GSM1210411_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.processed.1.zip	ntrBC
GSM1210410 1	ntrBC mutant S. flexneri, 4 h post infection	ntrBC rep1	ntrBC	Shigella flexneri	EFO	http://purl.obolibrary.org/obo/NCBITaxon_623	P-GSE49939-2	ArrayExpress	P-GSE49939-3	ArrayExpress	GSM1210410 extract 1	total RNA	P-GSE49939-4	ArrayExpress	GSM1210410 LE 1	Cy5	P-GSE49939-5	ArrayExpress	GSM1210410	A-GEOD-14649	ArrayExpress	array assay	P-GSE49939-6	ArrayExpress	GSM1210410_401058_A02_2013-02-08_635.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.raw.1.zip	P-GSE49939-1	ArrayExpress	GSM1210410_sample_table.txt norm	GSM1210410_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.processed.1.zip	ntrBC
GSM1210409 1	Wild type S. flexneri, 4 h post infection	WT rep3	WT	Shigella flexneri	EFO	http://purl.obolibrary.org/obo/NCBITaxon_623	P-GSE49939-2	ArrayExpress	P-GSE49939-3	ArrayExpress	GSM1210409 extract 1	total RNA	P-GSE49939-4	ArrayExpress	GSM1210409 LE 1	Cy5	P-GSE49939-5	ArrayExpress	GSM1210409	A-GEOD-14649	ArrayExpress	array assay	P-GSE49939-6	ArrayExpress	GSM1210409_424874_A03_2013-02-08_635.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.raw.1.zip	P-GSE49939-1	ArrayExpress	GSM1210409_sample_table.txt norm	GSM1210409_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.processed.1.zip	WT
GSM1210408 1	Wild type S. flexneri, 4 h post infection	WT rep2	WT	Shigella flexneri	EFO	http://purl.obolibrary.org/obo/NCBITaxon_623	P-GSE49939-2	ArrayExpress	P-GSE49939-3	ArrayExpress	GSM1210408 extract 1	total RNA	P-GSE49939-4	ArrayExpress	GSM1210408 LE 1	Cy5	P-GSE49939-5	ArrayExpress	GSM1210408	A-GEOD-14649	ArrayExpress	array assay	P-GSE49939-6	ArrayExpress	GSM1210408_424869_A03_2013-02-08_635.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.raw.1.zip	P-GSE49939-1	ArrayExpress	GSM1210408_sample_table.txt norm	GSM1210408_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.processed.1.zip	WT
GSM1210407 1	Wild type S. flexneri, 4 h post infection	WT rep1	WT	Shigella flexneri	EFO	http://purl.obolibrary.org/obo/NCBITaxon_623	P-GSE49939-2	ArrayExpress	P-GSE49939-3	ArrayExpress	GSM1210407 extract 1	total RNA	P-GSE49939-4	ArrayExpress	GSM1210407 LE 1	Cy5	P-GSE49939-5	ArrayExpress	GSM1210407	A-GEOD-14649	ArrayExpress	array assay	P-GSE49939-6	ArrayExpress	GSM1210407_424874_A04_2013-02-08_635.pair	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.raw.1.zip	P-GSE49939-1	ArrayExpress	GSM1210407_sample_table.txt norm	GSM1210407_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49939/E-GEOD-49939.processed.1.zip	WT