Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [age yrs]	Characteristics [gener]	Term Source REF	Term Accession Number	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [AGE YRS]	FactorValue [GENER]	Term Source REF	Term Accession Number
GSM1204735 1	Array1 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid bifurcation_intraplaque hemorrage_pDC-enriched	CarotidBif_IPH_pDC	65	male	EFO	EFO_0001266	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204735 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204735 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204735	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204735_1298.3_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204735_sample_table.txt norm	GSM1204735_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	65	male	EFO	EFO_0001266
GSM1204734 1	Array11 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_plaque shoulder_pDC-less	Carotid_shoulder_NOpDC_5	75	male	EFO	EFO_0001266	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204734 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204734 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204734	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204734_1295.5_not_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204734_sample_table.txt norm	GSM1204734_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	75	male	EFO	EFO_0001266
GSM1204733 1	Array10 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_plaque shoulder_pDC-less	Carotid_shoulder_NOpDC_4	53	female	EFO	EFO_0001265	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204733 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204733 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204733	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204733_1300.4_not_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204733_sample_table.txt norm	GSM1204733_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	53	female	EFO	EFO_0001265
GSM1204732 1	Array9 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_plaque shoulder_pDC-less	Carotid_shoulder_NOpDC_3	83	male	EFO	EFO_0001266	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204732 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204732 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204732	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204732_1310.5_not_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204732_sample_table.txt norm	GSM1204732_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	83	male	EFO	EFO_0001266
GSM1204731 1	Array8 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_plaque shoulder_pDC-less	Carotid_shoulder_NOpDC_2	65	male	EFO	EFO_0001266	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204731 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204731 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204731	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204731_1309.5_not_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204731_sample_table.txt norm	GSM1204731_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	65	male	EFO	EFO_0001266
GSM1204730 1	Array7 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_plaque shoulder_pDC-less	Carotid_shoulder_NOpDC_1	53	female	EFO	EFO_0001265	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204730 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204730 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204730	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204730_1299.2_not_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204730_sample_table.txt norm	GSM1204730_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	53	female	EFO	EFO_0001265
GSM1204729 1	Array6 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_plaque shoulder_pDC-enriched	Carotid_shoulder_pDC	53	female	EFO	EFO_0001265	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204729 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204729 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204729	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204729_1330.6_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204729_sample_table.txt norm	GSM1204729_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	53	female	EFO	EFO_0001265
GSM1204728 1	Array5 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_between media and plaque_pDC-enriched	Carotid_media_pDC_2	75	male	EFO	EFO_0001266	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204728 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204728 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204728	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204728_1311.7_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204728_sample_table.txt norm	GSM1204728_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	75	male	EFO	EFO_0001266
GSM1204727 1	Array4 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_between media and plaque_pDC-enriched	Carotid_media_pDC_1	83	male	EFO	EFO_0001266	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204727 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204727 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204727	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204727_1310.5_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204727_sample_table.txt norm	GSM1204727_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	83	male	EFO	EFO_0001266
GSM1204726 1	Array3 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_plaque shoulder_pDC-enriched	Carotid_shoulder_pDC_2	65	male	EFO	EFO_0001266	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204726 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204726 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204726	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204726_1309.5_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-2	ArrayExpress	GSM1204726_sample_table.txt norm	GSM1204726_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	65	male	EFO	EFO_0001266
GSM1204725 1	Array2 Gene expression data from inflammatory region within human atherosclerotic plaques obtained from endarterectomy of the carotid	Carotid_plaque shoulder_pDC-enriched	Carotid_shoulder_pDC_1	53	female	EFO	EFO_0001265	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	Human atherosclerotic plaque	P-GSE49670-3	ArrayExpress	P-GSE49670-4	ArrayExpress	GSM1204725 extract 1	total RNA	P-GSE49670-5	ArrayExpress	GSM1204725 LE 1	biotin	P-GSE49670-6	ArrayExpress	GSM1204725	A-GEOD-15034	ArrayExpress	array assay	P-GSE49670-7	ArrayExpress	GSM1204725_1299.2_enriched.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.raw.1.zip	P-GSE49670-1	ArrayExpress	GSM1204725_sample_table.txt norm	GSM1204725_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49670/E-GEOD-49670.processed.1.zip	53	female	EFO	EFO_0001265