Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [phenotype]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [PHENOTYPE]
GSM1200174 1	KSHV infected PEL	KSHV_vIRF4-BCBL-1, 24 h treatment of Doxycyline, rep2	wt+2	BCBL-1 (PEL derived cell line)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	vIRF4 overexpression	P-GSE49506-2	ArrayExpress	P-GSE49506-3	ArrayExpress	P-GSE49506-4	ArrayExpress	GSM1200174 extract 1	total RNA	P-GSE49506-5	ArrayExpress	GSM1200174 LE 1	biotin	P-GSE49506-6	ArrayExpress	GSM1200174	A-AFFY-44	ArrayExpress	array assay	P-GSE49506-7	ArrayExpress	GSM1200174_156736-156732.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49506/E-GEOD-49506.raw.1.zip	P-GSE49506-1	ArrayExpress	GSM1200174_sample_table.txt norm	GSM1200174_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49506/E-GEOD-49506.processed.1.zip	vIRF4 overexpression
GSM1200173 1	KSHV infected PEL	KSHV_vIRF4-BCBL-1, 24 h treatment of Doxycyline, rep1	wt+1	BCBL-1 (PEL derived cell line)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	vIRF4 overexpression	P-GSE49506-2	ArrayExpress	P-GSE49506-3	ArrayExpress	P-GSE49506-4	ArrayExpress	GSM1200173 extract 1	total RNA	P-GSE49506-5	ArrayExpress	GSM1200173 LE 1	biotin	P-GSE49506-6	ArrayExpress	GSM1200173	A-AFFY-44	ArrayExpress	array assay	P-GSE49506-7	ArrayExpress	GSM1200173_156735-156731.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49506/E-GEOD-49506.raw.1.zip	P-GSE49506-1	ArrayExpress	GSM1200173_sample_table.txt norm	GSM1200173_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49506/E-GEOD-49506.processed.1.zip	vIRF4 overexpression
GSM1200172 1	KSHV infected PEL	KSHV_vIRF4-BCBL-1, No treatment of Doxycyline, rep2	wt-2	BCBL-1 (PEL derived cell line)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	vIRF4 not expressed	P-GSE49506-2	ArrayExpress	P-GSE49506-3	ArrayExpress	P-GSE49506-4	ArrayExpress	GSM1200172 extract 1	total RNA	P-GSE49506-5	ArrayExpress	GSM1200172 LE 1	biotin	P-GSE49506-6	ArrayExpress	GSM1200172	A-AFFY-44	ArrayExpress	array assay	P-GSE49506-7	ArrayExpress	GSM1200172_156734-156730.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49506/E-GEOD-49506.raw.1.zip	P-GSE49506-1	ArrayExpress	GSM1200172_sample_table.txt norm	GSM1200172_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49506/E-GEOD-49506.processed.1.zip	vIRF4 not expressed
GSM1200171 1	KSHV infected PEL	KSHV_vIRF4-BCBL-1, No treatment of Doxycyline, rep1	wt-1	BCBL-1 (PEL derived cell line)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	vIRF4 not expressed	P-GSE49506-2	ArrayExpress	P-GSE49506-3	ArrayExpress	P-GSE49506-4	ArrayExpress	GSM1200171 extract 1	total RNA	P-GSE49506-5	ArrayExpress	GSM1200171 LE 1	biotin	P-GSE49506-6	ArrayExpress	GSM1200171	A-AFFY-44	ArrayExpress	array assay	P-GSE49506-7	ArrayExpress	GSM1200171_156733-156729.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49506/E-GEOD-49506.raw.1.zip	P-GSE49506-1	ArrayExpress	GSM1200171_sample_table.txt norm	GSM1200171_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49506/E-GEOD-49506.processed.1.zip	vIRF4 not expressed