Source Name Comment [ENA_SAMPLE] Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_LAYOUT] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Protocol REF Term Source REF Scan Name Comment [ENA_RUN] Comment [FASTQ_URI] FactorValue [organism part] Term Source REF Term Accession Number GSM1195635 1 SRS464207 small RNA fraction Root, Factor Myc/Nod control roots sRMycNod3 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195635 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195635 SRX327845 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943057 SRR943057 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943057/SRR943057.fastq.gz root EFO EFO_0000989 GSM1195634 1 SRS464206 small RNA fraction Root, Factor Myc/Nod control roots sRMycNod2 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195634 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195634 SRX327844 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943056 SRR943056 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943056/SRR943056.fastq.gz root EFO EFO_0000989 GSM1195633 1 SRS464205 small RNA fraction Root, Factor Myc/Nod control roots sRMycNod1 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195633 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195633 SRX327843 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943055 SRR943055 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943055/SRR943055.fastq.gz root EFO EFO_0000989 GSM1195632 1 SRS464204 small RNA fraction Root, treated with NOD factor sRNod3 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195632 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195632 SRX327842 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943054 SRR943054 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943054/SRR943054.fastq.gz root EFO EFO_0000989 GSM1195631 1 SRS464203 small RNA fraction Root, treated with NOD factor sRNod2 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195631 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195631 SRX327841 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943053 SRR943053 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943053/SRR943053.fastq.gz root EFO EFO_0000989 GSM1195630 1 SRS464202 small RNA fraction Root, treated with NOD factor sRNod1 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195630 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195630 SRX327840 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943052 SRR943052 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943052/SRR943052.fastq.gz root EFO EFO_0000989 GSM1195629 1 SRS464201 small RNA fraction Root, treated with Myc-LCO factor sRMyc3 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195629 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195629 SRX327839 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943051 SRR943051 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943051/SRR943051.fastq.gz root EFO EFO_0000989 GSM1195628 1 SRS464199 small RNA fraction Root, treated with Myc-LCO factor sRMyc2 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195628 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195628 SRX327838 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943050 SRR943050 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943050/SRR943050.fastq.gz root EFO EFO_0000989 GSM1195627 1 SRS464198 small RNA fraction Root, treated with Myc-LCO factor sRMyc1 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195627 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195627 SRX327837 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943049 SRR943049 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943049/SRR943049.fastq.gz root EFO EFO_0000989 GSM1195626 1 SRS464197 small RNA fraction Root, treated by Salt sRS4 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 Root tips P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195626 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195626 SRX327836 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943048 SRR943048 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943048/SRR943048.fastq.gz Root tips GSM1195625 1 SRS464196 small RNA fraction Root, untreated sR4 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 Root tips P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195625 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195625 SRX327835 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943047 SRR943047 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943047/SRR943047.fastq.gz Root tips GSM1195624 1 SRS464195 small RNA fraction Leaves, untreated Vir Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 Leaves P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195624 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195624 SRX327834 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943046 SRR943046 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943046/SRR943046.fastq.gz Leaves GSM1195623 1 SRS464194 small RNA fraction Root, treated by Salt sRS2 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 Root tips P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195623 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195623 SRX327833 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943045 SRR943045 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943045/SRR943045.fastq.gz Root tips GSM1195622 1 SRS464193 small RNA fraction Root, untreated sR2 Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 Root tips P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195622 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195622 SRX327832 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943044 SRR943044 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943044/SRR943044.fastq.gz Root tips GSM1195621 1 SRS464192 small RNA fraction Root, Verticillium albo-atrum-infected sRVaa Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195621 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195621 SRX327831 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943043 SRR943043 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943043/SRR943043.fastq.gz root EFO EFO_0000989 GSM1195620 1 SRS464191 small RNA fraction Root, untreated sRNoRs Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195620 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195620 SRX327830 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943042 SRR943042 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943042/SRR943042.fastq.gz root EFO EFO_0000989 GSM1195619 1 SRS464190 small RNA fraction Root, Ralstonia solanacearum GMI1000-infected sRRs Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195619 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195619 SRX327829 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943041 SRR943041 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943041/SRR943041.fastq.gz root EFO EFO_0000989 GSM1195618 1 SRS464189 small RNA fraction Root, untreated sRNoGi Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195618 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195618 SRX327828 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943040 SRR943040 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943040/SRR943040.fastq.gz root EFO EFO_0000989 GSM1195617 1 SRS464188 small RNA fraction Root, Rhizophagus irregularis-infected sRGI Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195617 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195617 SRX327827 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943039 SRR943039 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943039/SRR943039.fastq.gz root EFO EFO_0000989 GSM1195616 1 SRS464187 small RNA fraction Supernodulator Root, untreated sSNR Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195616 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195616 SRX327826 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943038 SRR943038 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943038/SRR943038.fastq.gz root EFO EFO_0000989 GSM1195615 1 SRS464186 small RNA fraction Supernodulator Root, Sinorhizobium meliloti Sm2011-infected sSNRSm Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 root EFO EFO_0000989 P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195615 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195615 SRX327825 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943037 SRR943037 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943037/SRR943037.fastq.gz root EFO EFO_0000989 GSM1195614 1 SRS464185 small RNA fraction Root, treated by Salt (NaCl 100mM) sRS Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 Root tips P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195614 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195614 SRX327824 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943036 SRR943036 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943036/SRR943036.fastq.gz Root tips GSM1195613 1 SRS464184 small RNA fraction Root, untreated sR Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 Root tips P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195613 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195613 SRX327823 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943035 SRR943035 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943035/SRR943035.fastq.gz Root tips GSM1195613 1 SRS464184 small RNA fraction Root, untreated sR Medicago truncatula EFO http://purl.obolibrary.org/obo/NCBITaxon_3880 Root tips P-GSE49226-1 ArrayExpress P-GSE49226-2 ArrayExpress P-GSE49226-3 ArrayExpress GSM1195613 extract 1 Illumina HiSeq 2000 SINGLE size fractionation transcriptomic RNA-Seq total RNA GSM1195613 SRX327823 Illumina HiSeq 2000 (Medicago truncatula) sequencing assay P-GSE49226-4 ArrayExpress SRR943034 SRR943034 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR943/SRR943034/SRR943034.fastq.gz Root tips