Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [age] Characteristics [chip antibody] Characteristics [genotype] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Term Source REF Term Accession Number Characteristics [strain/background] Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [AGE] FactorValue [CHIP ANTIBODY] FactorValue [GENOTYPE] FactorValue [ORGANISM PART] Term Source REF Term Accession Number GSM1187672 1 Strand-specific paired-end mRNA-Seq. Summary processed data TSrpkms.txt R6/2 wildtype littermate, striatum, 12 weeks TSW491 12 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187672 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187672 SRX323809 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187672_TSW491.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified wild type brain striatum GSM1187671 1 Strand-specific paired-end mRNA-Seq. Summary processed data TSrpkms.txt R6/2 wildtype littermate, striatum, 12 weeks TSW479 12 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187671 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187671 SRX323808 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187671_TSW479.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified wild type brain striatum GSM1187670 1 Strand-specific paired-end mRNA-Seq. Summary processed data TSrpkms.txt R6/2 wildtype littermate, striatum, 12 weeks TSW478 12 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187670 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187670 SRX323807 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187670_TSW478.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified wild type brain striatum GSM1187669 1 Strand-specific paired-end mRNA-Seq. Summary processed data TSrpkms.txt R6/2, striatum, 12 weeks TSM492 12 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187669 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1187669 SRX323806 Illumina HiSeq 2000 (Mus musculus) sequencing assay GSM1187669_TSM492.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain striatum GSM1187668 1 Strand-specific paired-end mRNA-Seq. Summary processed data TSrpkms.txt R6/2, striatum, 12 weeks TSM490 12 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187668 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187668 SRX323805 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187668_TSM490.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain striatum GSM1187667 1 Strand-specific paired-end mRNA-Seq. Summary processed data TSrpkms.txt R6/2, striatum, 12 weeks TSM482 12 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187667 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187667 SRX323804 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187667_TSM482.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain striatum GSM1187666 1 Strand-specific paired-end mRNA-Seq. Summary processed data TCrpkms.txt R6/2 wildtype littermate, cortex, 12 weeks TCW9469 12 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187666 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187666 SRX323803 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187666_TCW9469.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified wild type brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187665 1 Strand-specific paired-end mRNA-Seq. Summary processed data TCrpkms.txt R6/2 wildtype littermate, cortex, 12 weeks TCW9457 12 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187665 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187665 SRX323802 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187665_TCW9457.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified wild type brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187664 1 Strand-specific paired-end mRNA-Seq. Summary processed data TCrpkms.txt R6/2 wildtype littermate, cortex, 12 weeks TCW9451 12 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187664 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187664 SRX323801 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187664_TCW9451.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified wild type brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187663 1 Strand-specific paired-end mRNA-Seq. Summary processed data TCrpkms.txt R6/2, cortex, 12 weeks TCM9453 12 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187663 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187663 SRX323800 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187663_TCM9453.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187662 1 Strand-specific paired-end mRNA-Seq. Summary processed data TCrpkms.txt R6/2, cortex, 12 weeks TCM9452 12 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187662 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1187662 SRX323799 Illumina HiSeq 2000 (Mus musculus) sequencing assay GSM1187662_TCM9452.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187661 1 Strand-specific paired-end mRNA-Seq. Summary processed data TCrpkms.txt R6/2, cortex, 12 weeks TCM9450 12 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187661 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187661 SRX323798 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187661_TCM9450.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187660 1 Strand-specific paired-end mRNA-Seq. Summary processed data ESrpkms.txt R6/2 wildtype littermate, striatum, 8 weeks ESW183 8 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187660 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187660 SRX323797 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187660_ESW183.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified wild type brain striatum GSM1187659 1 Strand-specific paired-end mRNA-Seq. Summary processed data ESrpkms.txt R6/2 wildtype littermate, striatum, 8 weeks ESW180 8 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187659 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187659 SRX323796 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187659_ESW180.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified wild type brain striatum GSM1187658 1 Strand-specific paired-end mRNA-Seq. Summary processed data ESrpkms.txt R6/2 wildtype littermate, striatum, 8 weeks ESW176 8 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187658 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187658 SRX323795 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187658_ESW176.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified wild type brain striatum GSM1187657 1 Strand-specific paired-end mRNA-Seq. Summary processed data ESrpkms.txt R6/2, striatum, 8 weeks ESM192 8 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187657 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187657 SRX323794 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187657_ESM192.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain striatum GSM1187656 1 Strand-specific paired-end mRNA-Seq. Summary processed data ESrpkms.txt R6/2, striatum, 8 weeks ESM184 8 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187656 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187656 SRX323793 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187656_ESM184.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain striatum GSM1187655 1 Strand-specific paired-end mRNA-Seq. Summary processed data ESrpkms.txt R6/2, striatum, 8 weeks ESM181 8 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187655 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187655 SRX323792 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187655_ESM181.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain striatum GSM1187654 1 Strand-specific paired-end mRNA-Seq. Summary processed data ECrpkms.txt R6/2 wildtype littermate, cortex, 8 weeks ECW180 8 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187654 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187654 SRX323791 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187654_ECW180.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified wild type brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187653 1 Strand-specific paired-end mRNA-Seq. Summary processed data ECrpkms.txt R6/2 wildtype littermate, cortex, 8 weeks ECW178 8 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187653 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187653 SRX323790 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187653_ECW178.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified wild type brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187652 1 Strand-specific paired-end mRNA-Seq. Summary processed data ECrpkms.txt R6/2 wildtype littermate, cortex, 8 weeks ECW176 8 weeks wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187652 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187652 SRX323789 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187652_ECW176.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified wild type brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187651 1 Strand-specific paired-end mRNA-Seq. Summary processed data ECrpkms.txt R6/2, cortex, 8 weeks ECM184 8 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187651 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1187651 SRX323788 Illumina HiSeq 2000 (Mus musculus) sequencing assay GSM1187651_ECM184.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187650 1 Strand-specific paired-end mRNA-Seq. Summary processed data ECrpkms.txt R6/2, cortex, 8 weeks ECM181 8 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187650 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187650 SRX323787 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187650_ECM181.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187649 1 Strand-specific paired-end mRNA-Seq. Summary processed data ECrpkms.txt R6/2, cortex, 8 weeks ECM175 8 weeks R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-2 ArrayExpress GSM1187649 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1187649 SRX323786 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187649_ECM175.combined.rpkm ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 8 weeks not specified R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187630 1 This Sample represents 2 replicates. R6/2, striatum, 12 weeks ChIP_R6-2_H3K4me3_12wks_str_rep1_rep2 12 weeks H3K4me3 (Millipore, cat 17-614) R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-1 ArrayExpress GSM1187630 extract 1 Illumina Genome Analyzer IIx ChIP genomic ChIP-Seq genomic DNA GSM1187630 SRX323784 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187630_ChIP_R6-2_H3K4me3_12wks_str.bw ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.1.zip 12 weeks H3K4me3 (Millipore, cat 17-614) R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain striatum GSM1187629 1 This Sample represents 2 replicates. R6/2 wildtype littermate, striatum, 12 weeks ChIP_WT_H3K4me3_12wks_str_rep1_rep2 12 weeks H3K4me3 (Millipore, cat 17-614) wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-1 ArrayExpress GSM1187629 extract 1 Illumina Genome Analyzer IIx ChIP genomic ChIP-Seq genomic DNA GSM1187629 SRX323783 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187629_ChIP_WT_H3K4me3_12wks_str.bw ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.2.zip 12 weeks H3K4me3 (Millipore, cat 17-614) wild type brain striatum GSM1187628 1 This Sample represents 2 replicates. R6/2, striatum, 8 weeks ChIP_R6-2_H3K4me3_8wks_str_rep1_rep2 8 weeks H3K4me3 (Millipore, cat 17-614, lot JBC1793805) R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-1 ArrayExpress GSM1187628 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1187628 SRX323782 Illumina HiSeq 2000 (Mus musculus) sequencing assay GSM1187628_ChIP_R6-2_H3K4me3_8wks_str.bw ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.2.zip 8 weeks H3K4me3 (Millipore, cat 17-614, lot JBC1793805) R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain striatum GSM1187627 1 This Sample represents 2 replicates. R6/2 wildtype littermate, striatum, 8 weeks ChIP_WT_H3K4me3_8wks_str_rep1_rep2 8 weeks H3K4me3 (Millipore, cat 17-614, lot JBC1793805) wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain striatum C57Bl/6 / CBA P-GSE48963-1 ArrayExpress GSM1187627 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1187627 SRX323781 Illumina HiSeq 2000 (Mus musculus) sequencing assay GSM1187627_ChIP_WT_H3K4me3_8wks_str.bw ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.3.zip 8 weeks H3K4me3 (Millipore, cat 17-614, lot JBC1793805) wild type brain striatum GSM1187626 1 This Sample represents 3 replicates. R6/2, cortex, 12 weeks ChIP_R6-2_H3K4me3_12wks_ctx_rep1_rep2_rep3 12 weeks H3K4me3 (Millipore, cat 17-614) R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-1 ArrayExpress GSM1187626 extract 1 Illumina Genome Analyzer IIx ChIP genomic ChIP-Seq genomic DNA GSM1187626 SRX323780 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187626_ChIP_R6-2_H3K4me3_12wks_ctx.bw ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.3.zip 12 weeks H3K4me3 (Millipore, cat 17-614) R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187625 1 This Sample represents 3 replicates. R6/2 wildtype littermate, cortex, 12 weeks ChIP_WT_H3K4me3_12wks_ctx_rep1_rep2_rep3 12 weeks H3K4me3 (Millipore, cat 17-614) wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-1 ArrayExpress GSM1187625 extract 1 Illumina Genome Analyzer IIx ChIP genomic ChIP-Seq genomic DNA GSM1187625 SRX323779 Illumina Genome Analyzer IIx (Mus musculus) sequencing assay GSM1187625_ChIP_WT_H3K4me3_12wks_ctx.bw ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.4.zip 12 weeks H3K4me3 (Millipore, cat 17-614) wild type brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187624 1 This Sample represents 2 replicates. R6/2, cortex, 8 weeks ChIP_R6-2_H3K4me3_8wks_ctx_rep1_rep2 8 weeks H3K4me3 (Millipore, cat 17-614, lot JBC1793805) R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-1 ArrayExpress GSM1187624 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1187624 SRX323778 Illumina HiSeq 2000 (Mus musculus) sequencing assay GSM1187624_ChIP_R6-2_H3K4me3_8wks_ctx.bw ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.4.zip 8 weeks H3K4me3 (Millipore, cat 17-614, lot JBC1793805) R6/2 transgenic (Mangiarini et al., Cell 87:493-506,1996) brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 GSM1187623 1 This Sample represents 2 replicates. R6/2 wildtype littermate, cortex, 8 weeks ChIP_WT_H3K4me3_8wks_ctx_rep1_rep2 8 weeks H3K4me3 (Millipore, cat 17-614, lot JBC1793805) wild type Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956 C57Bl/6 / CBA P-GSE48963-1 ArrayExpress GSM1187623 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1187623 SRX323777 Illumina HiSeq 2000 (Mus musculus) sequencing assay GSM1187623_ChIP_WT_H3K4me3_8wks_ctx.bw ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48963/E-GEOD-48963.processed.5.zip 8 weeks H3K4me3 (Millipore, cat 17-614, lot JBC1793805) wild type brain cortex EFO http://purl.obolibrary.org/obo/UBERON_0000956