Source Name Comment [Sample_characteristics] Comment [Sample_source_name] Comment [Sample_title] Characteristics [Sex] Term Source REF Term Accession Number Characteristics [developmental stage] Characteristics [genotype] Characteristics [organism] Term Source REF Term Accession Number Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [Platform_title] Technology Type Derived Array Data File Comment [Derived ArrayExpress FTP file] GSM1183604 1 strain: OP82(official name : OP82 genotype : unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-16::EGFP fusion protein is expressed in the correct CEH-16 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-16 transcription factor. made_by : Bob Waterston's lab from UW ) CEH-16_GFP_L2_ChIP_Rep2 Snyder_CEH-16_GFP_L2_ChIP_Rep2 hermaphrodite EFO EFO_0001267 L2 unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) Caenorhabditis elegans EFO http://purl.obolibrary.org/obo/NCBITaxon_6239 P-GSE48695-1 ArrayExpress GSM1183604 extract 1 Illumina Genome Analyzer ChIP genomic ChIP-Seq genomic DNA GSM1183604 Illumina Genome Analyzer (Caenorhabditis elegans) sequencing assay GSM1183604_Snyder_CEH-16_GFP_L2_rep2.bedgraph ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48695/E-GEOD-48695.processed.1.zip GSM1183604 1 strain: OP82(official name : OP82 genotype : unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-16::EGFP fusion protein is expressed in the correct CEH-16 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-16 transcription factor. made_by : Bob Waterston's lab from UW ) CEH-16_GFP_L2_ChIP_Rep2 Snyder_CEH-16_GFP_L2_ChIP_Rep2 hermaphrodite EFO EFO_0001267 L2 unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) Caenorhabditis elegans EFO http://purl.obolibrary.org/obo/NCBITaxon_6239 P-GSE48695-1 ArrayExpress GSM1183604 extract 1 Illumina Genome Analyzer ChIP genomic ChIP-Seq genomic DNA GSM1183604 Illumina Genome Analyzer (Caenorhabditis elegans) sequencing assay GSM1183604_Snyder_CEH-16_GFP_L2_rep2.GFF3 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48695/E-GEOD-48695.processed.1.zip GSM1183604 1 strain: OP82(official name : OP82 genotype : unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-16::EGFP fusion protein is expressed in the correct CEH-16 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-16 transcription factor. made_by : Bob Waterston's lab from UW ) CEH-16_GFP_L2_ChIP_Rep2 Snyder_CEH-16_GFP_L2_ChIP_Rep2 hermaphrodite EFO EFO_0001267 L2 unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) Caenorhabditis elegans EFO http://purl.obolibrary.org/obo/NCBITaxon_6239 P-GSE48695-1 ArrayExpress GSM1183604 extract 1 Illumina Genome Analyzer ChIP genomic ChIP-Seq genomic DNA GSM1183604 Illumina Genome Analyzer (Caenorhabditis elegans) sequencing assay GSM1183604_Snyder_CEH-16_GFP_L2_rep2-1.bedgraph ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48695/E-GEOD-48695.processed.1.zip GSM1183602 1 strain: OP82(official name : OP82 genotype : unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-16::EGFP fusion protein is expressed in the correct CEH-16 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-16 transcription factor. made_by : Bob Waterston's lab from UW ) CEH-16_GFP_L2_ChIP_Rep1 Snyder_CEH-16_GFP_L2_ChIP_Rep1 hermaphrodite EFO EFO_0001267 L2 unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) Caenorhabditis elegans EFO http://purl.obolibrary.org/obo/NCBITaxon_6239 P-GSE48695-1 ArrayExpress GSM1183602 extract 1 Illumina Genome Analyzer ChIP genomic ChIP-Seq genomic DNA GSM1183602 Illumina Genome Analyzer (Caenorhabditis elegans) sequencing assay GSM1183602_Snyder_CEH-16_GFP_L2_rep1.bedgraph ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48695/E-GEOD-48695.processed.1.zip GSM1183602 1 strain: OP82(official name : OP82 genotype : unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-16::EGFP fusion protein is expressed in the correct CEH-16 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-16 transcription factor. made_by : Bob Waterston's lab from UW ) CEH-16_GFP_L2_ChIP_Rep1 Snyder_CEH-16_GFP_L2_ChIP_Rep1 hermaphrodite EFO EFO_0001267 L2 unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) Caenorhabditis elegans EFO http://purl.obolibrary.org/obo/NCBITaxon_6239 P-GSE48695-1 ArrayExpress GSM1183602 extract 1 Illumina Genome Analyzer ChIP genomic ChIP-Seq genomic DNA GSM1183602 Illumina Genome Analyzer (Caenorhabditis elegans) sequencing assay GSM1183602_Snyder_CEH-16_GFP_L2_rep1.GFF3 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48695/E-GEOD-48695.processed.1.zip GSM1183602 1 strain: OP82(official name : OP82 genotype : unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-16::EGFP fusion protein is expressed in the correct CEH-16 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-16 transcription factor. made_by : Bob Waterston's lab from UW ) CEH-16_GFP_L2_ChIP_Rep1 Snyder_CEH-16_GFP_L2_ChIP_Rep1 hermaphrodite EFO EFO_0001267 L2 unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) Caenorhabditis elegans EFO http://purl.obolibrary.org/obo/NCBITaxon_6239 P-GSE48695-1 ArrayExpress GSM1183602 extract 1 Illumina Genome Analyzer ChIP genomic ChIP-Seq genomic DNA GSM1183602 Illumina Genome Analyzer (Caenorhabditis elegans) sequencing assay GSM1183602_Snyder_CEH-16_GFP_L2_rep1-1.bedgraph ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48695/E-GEOD-48695.processed.1.zip GSM1183603 1 strain: OP82(official name : OP82 genotype : unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-16::EGFP fusion protein is expressed in the correct CEH-16 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-16 transcription factor. made_by : Bob Waterston's lab from UW ) CEH-16_GFP_L2_Input_Rep2 Snyder_CEH-16_GFP_L2_Input_Rep2 hermaphrodite EFO EFO_0001267 L2 unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) Caenorhabditis elegans EFO http://purl.obolibrary.org/obo/NCBITaxon_6239 P-GSE48695-1 ArrayExpress GSM1183603 extract 1 Illumina Genome Analyzer ChIP genomic ChIP-Seq genomic DNA GSM1183603 Illumina Genome Analyzer (Caenorhabditis elegans) sequencing assay GSM1183601 1 strain: OP82(official name : OP82 genotype : unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-16::EGFP fusion protein is expressed in the correct CEH-16 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-16 transcription factor. made_by : Bob Waterston's lab from UW ) CEH-16_GFP_L2_Input_Rep1 Snyder_CEH-16_GFP_L2_Input_Rep1 hermaphrodite EFO EFO_0001267 L2 unc119(ed3);wgIs82(ceh-16::TY1 EGFP FLAG;unc119) Caenorhabditis elegans EFO http://purl.obolibrary.org/obo/NCBITaxon_6239 P-GSE48695-1 ArrayExpress GSM1183601 extract 1 Illumina Genome Analyzer ChIP genomic ChIP-Seq genomic DNA GSM1183601 Illumina Genome Analyzer (Caenorhabditis elegans) sequencing assay