Source Name	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [developmental stage]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [ORGANISM PART]	Term Source REF	Term Accession Number
GSM1176422 1	Rhombomere 5	12_chick_r5_set_2	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 5	EFO	http://purl.obolibrary.org/obo/UBERON_0005515	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176422 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176422 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176422	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176422_12_chick_r5_set_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176422_sample_table.txt norm	GSM1176422_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 5	EFO	http://purl.obolibrary.org/obo/UBERON_0005515
GSM1176421 1	Rhombomere 4	11_chick_r4_set_2	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 4	EFO	http://purl.obolibrary.org/obo/UBERON_0005511	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176421 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176421 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176421	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176421_11_chick_r4_set_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176421_sample_table.txt norm	GSM1176421_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 4	EFO	http://purl.obolibrary.org/obo/UBERON_0005511
GSM1176420 1	Rhombomere 3	10_chick_r3_set_2	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 3	EFO	http://purl.obolibrary.org/obo/UBERON_0005507	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176420 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176420 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176420	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176420_10_chick_r3_set_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176420_sample_table.txt norm	GSM1176420_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 3	EFO	http://purl.obolibrary.org/obo/UBERON_0005507
GSM1176419 1	Rhombomere 2	9_chick_r2_set_2	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 2	EFO	http://purl.obolibrary.org/obo/UBERON_0005569	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176419 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176419 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176419	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176419_9_chick_r2_set_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176419_sample_table.txt norm	GSM1176419_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 2	EFO	http://purl.obolibrary.org/obo/UBERON_0005569
GSM1176418 1	Rhombomere 1	8_chick_r1_set_2	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 1	EFO	http://purl.obolibrary.org/obo/UBERON_0005499	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176418 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176418 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176418	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176418_8_chick_r1_set_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176418_sample_table.txt norm	GSM1176418_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 1	EFO	http://purl.obolibrary.org/obo/UBERON_0005499
GSM1176417 1	midbrain	7_chick_m_set_2	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	midbrain	EFO	http://purl.obolibrary.org/obo/UBERON_0001891	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176417 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176417 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176417	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176417_7_chick_m_set_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176417_sample_table.txt norm	GSM1176417_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	midbrain	EFO	http://purl.obolibrary.org/obo/UBERON_0001891
GSM1176416 1	Rhombomere 5	6_chick_r5_set_1	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 5	EFO	http://purl.obolibrary.org/obo/UBERON_0005515	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176416 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176416 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176416	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176416_6_chick_r5_set_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176416_sample_table.txt norm	GSM1176416_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 5	EFO	http://purl.obolibrary.org/obo/UBERON_0005515
GSM1176415 1	Rhombomere 4	5_chick_r4_set_1	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 4	EFO	http://purl.obolibrary.org/obo/UBERON_0005511	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176415 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176415 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176415	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176415_5_chick_r4_set_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176415_sample_table.txt norm	GSM1176415_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 4	EFO	http://purl.obolibrary.org/obo/UBERON_0005511
GSM1176414 1	Rhombomere 3	4_chick_r3_set_1	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 3	EFO	http://purl.obolibrary.org/obo/UBERON_0005507	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176414 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176414 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176414	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176414_4_chick_r3_set_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176414_sample_table.txt norm	GSM1176414_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 3	EFO	http://purl.obolibrary.org/obo/UBERON_0005507
GSM1176413 1	Rhombomere 2	3_chick_r2_set_1	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 2	EFO	http://purl.obolibrary.org/obo/UBERON_0005569	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176413 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176413 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176413	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176413_3_chick_r2_set_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176413_sample_table.txt norm	GSM1176413_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 2	EFO	http://purl.obolibrary.org/obo/UBERON_0005569
GSM1176412 1	Rhombomere 1	2_chick_r1_set_1	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	rhombomere 1	EFO	http://purl.obolibrary.org/obo/UBERON_0005499	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176412 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176412 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176412	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176412_2_chick_r1_set_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176412_sample_table.txt norm	GSM1176412_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	rhombomere 1	EFO	http://purl.obolibrary.org/obo/UBERON_0005499
GSM1176411 1	midbrain	1_chick_m_set_1	HH10 Neural Tube	Gallus gallus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9031	midbrain	EFO	http://purl.obolibrary.org/obo/UBERON_0001891	P-GSE48359-2	ArrayExpress	P-GSE48359-3	ArrayExpress	P-GSE48359-4	ArrayExpress	GSM1176411 extract 1	total RNA	P-GSE48359-5	ArrayExpress	GSM1176411 LE 1	Biotin	P-GSE48359-6	ArrayExpress	GSM1176411	A-AFFY-103	ArrayExpress	array assay	P-GSE48359-7	ArrayExpress	GSM1176411_1_chick_m_set_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.raw.1.zip	P-GSE48359-1	ArrayExpress	GSM1176411_sample_table.txt norm	GSM1176411_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48359/E-GEOD-48359.processed.1.zip	midbrain	EFO	http://purl.obolibrary.org/obo/UBERON_0001891