Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [background strain]	Characteristics [cell line]	Characteristics [cell type]	Term Source REF	Term Accession Number	Characteristics [chemical treatment condition]	Characteristics [chemical treatment conditon]	Characteristics [development stage]	Characteristics [developmental stage]	Term Source REF	Term Accession Number	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [passage]	Characteristics [strain or line]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	FactorValue [CELL LINE]	FactorValue [CELL TYPE]	Term Source REF	Term Accession Number	FactorValue [CHEMICAL TREATMENT CONDITION]	FactorValue [CHEMICAL TREATMENT CONDITON]	FactorValue [DEVELOPMENT STAGE]	FactorValue [STRAIN OR LINE]
GSM1173366 1	CiPS11	CiPS line 11	CiPS11 [CiPS11]	  	  	pluripotent stem cell	  	  	VC6TFMB+Z	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	C57xICR	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173366 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173366	SRX314757	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	pluripotent stem cell	  	  	VC6TFMB+Z	not specified	not specified	C57xICR
GSM1173365 1	CiPS6	CiPS line 6	CiPS 6 [CiPS6]	  	  	pluripotent stem cell	  	  	VC6TFMB+Z	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	C57xICR	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173365 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173365	SRX314756	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	pluripotent stem cell	  	  	VC6TFMB+Z	not specified	not specified	C57xICR
GSM1173364 1	ESCs2	Embryonic stem cell line R1	Embryonic stem cells [ESCs2]	  	  	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	no treatment	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	129	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173364 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173364	SRX314755	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	no treatment	not specified	not specified	129
GSM1173363 1	ESCs1	Embryonic stem cell line R1	Embryonic stem cells [ESCs1]	  	  	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	no treatment	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	129	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173363 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173363	SRX314754	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	no treatment	not specified	not specified	129
GSM1173362 1	R1 2	Embryonic stem cell line R1	Embryonic stem cells [R1 2]	  	  	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	no treatment	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	129	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173362 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173362	SRX314753	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	no treatment	not specified	not specified	129
GSM1173361 1	R1	Embryonic stem cell line R1	Embryonic stem cells [R1]	  	  	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	no treatment	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	129	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173361 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173361	SRX314752	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	no treatment	not specified	not specified	129
GSM1173360 1	GFP+ colonies	Mouse embryonic fibroblasts	Oct4-GFPpositive cell colonies [GFP+ colonies]	  	  	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	VC6TF+Z	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	C57xICR	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173360 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173360	SRX314751	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	VC6TF+Z	not specified	not specified	C57xICR
GSM1173359 1	GFP+ clusters	Mouse embryonic fibroblasts	Oct4-GFPpositive cell clusters [GFP+ clusters]	  	  	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	VC6TF+Z	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	C57xICR	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173359 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173359	SRX314750	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	VC6TF+Z	not specified	not specified	C57xICR
GSM1173358 1	GFP- cells2	Mouse embryonic fibroblasts	Oct4-GFP negative cells2 [GFP- cells2]	  	  	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	VC6TF	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	C57xICR	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173358 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173358	SRX314749	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	VC6TF	not specified	not specified	C57xICR
GSM1173357 1	GFP- cells1	Mouse embryonic fibroblasts	Oct4-GFP negative cells1 [GFP- cells1]	  	  	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	VC6TF	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	C57xICR	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173357 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173357	SRX314748	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	VC6TF	not specified	not specified	C57xICR
GSM1173356 1	MEFs2	Mouse embryonic fibroblasts	Mouse embryonic fibroblasts2 [MEFs2]	  	  	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	no treatment	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	C57xICR	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173356 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173356	SRX314747	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	no treatment	not specified	not specified	C57xICR
GSM1173355 1	MEFs1	Mouse embryonic fibroblasts	Mouse embryonic fibroblasts1 [MEFs1]	  	  	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	no treatment	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	C57xICR	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173355 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173355	SRX314746	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	no treatment	not specified	not specified	C57xICR
GSM1173354 1	MEFs	Mouse embryonic fibroblasts	Mouse embryonic fibroblasts [MEFs]	  	  	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	no treatment	  	  	embryo	EFO	http://purl.obolibrary.org/obo/UBERON_0000922	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	  	C57xICR	P-GSE48243-14	ArrayExpress	P-GSE48243-15	ArrayExpress	P-GSE48243-16	ArrayExpress	GSM1173354 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1173354	SRX314745	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	not specified	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	no treatment	not specified	not specified	C57xICR