Comment[ArrayExpressAccession]	E-GEOD-47542
MAGE-TAB Version	1.1							
Public Release Date	2013-12-31
Investigation Title	IMR90 lung fibroblasts treated with IL-4 or IL-13							
Comment[Submitted Name]	IMR90 lung fibroblasts treated with IL-4 or IL-13
Experiment Description	IL-4 and IL-13 are cytokines involved in type 2 immune responses involved in atopic asthma and other diseases. They have a partially overlapping set of cognate receptors whose roles are incompletely understood. Here we explore the effects of these cytokines on lung fibroblasts in order to assess the global similarities and contrasts in the genes whose expression their ligation modulates. IMR-90 lung fibroblast cells were cultured on matrigel or plastic and treated for 24 hours with IL-4 (10 ng/ml), IL-13 (10ng/ml), or TNFa (10 ng/ml) before harvest.							
Term Source Name	ArrayExpress	EFO
Term Source File	http://www.ebi.ac.uk/arrayexpress/	http://www.ebi.ac.uk/efo/efo.owl						
Person Last Name	Abbas	Abbas	Arron	Chandriani				
Person First Name	Alex	Alexander	Joseph	Sanjay				
Person Mid Initials		R	R					
Person Email	abbas@gene.com							
Person Affiliation	Genentech, Inc.							
Person Address	Bioinformatics, Genentech, Inc., 1 DNA Way, South San Francisco, CA, USA							
Person Roles	submitter							
Protocol Name	P-GSE47542-1	P-GSE47542-5	P-GSE47542-7	P-GSE47542-2	P-GSE47542-3	P-GSE47542-4	P-GSE47542-6	P-GSE47542-8
Protocol Description	The data were processed with Agilent Feature Extraction software, version 10.7.3.1, using default settings, including linear and Lowess normalization. ID_REF =  VALUE = Agilent log2 ratio, test channel (ch1)/reference channel (ch2).	Biotinylated cRNA were prepared according to the standard Agilent protocol.	cRNA was hybridized on Agilent-014850 Whole Human Genome Microarray G4112F.	Cells were treated for 24 hours with IL-4 (10 ng/ml), IL-13 (10ng/ml), or TNFa (10 ng/ml).	IMR-90 cells (ATCC, Manassas, VA; Catalog # CCL-186) were cultured in DMEM medium supplemented with 10% FBS (Sigma, St. Louis, MO; Catalog # F2442) and Penicillin/Streptomycin (Invitrogen, Carlsbad, CA; Catalog # 15140) on a bed of growth factor reduced Matrigel (GFR Matrigel, BD Biosciences, Bedford, MA; Catalog No. 354230) or plastic.	RNeasy Mini Kit (Qiagen).	Stratagene Universal Human Reference RNA (catalog number 740000).	Chips were scanned using the Agilent Surescan Microarray Scanner.
Protocol Type	normalization data transformation protocol	labelling protocol	hybridization protocol	sample treatment protocol	growth protocol	nucleic acid extraction protocol	nucleic acid extraction protocol	array scanning protocol
Experimental Factor Name	TREATMENT	SUBSTRATE						
Experimental Factor Type	treatment	substrate						
Comment[SecondaryAccession]	GSE47542							
Comment[GEOReleaseDate]	2013-12-31							
Comment[ArrayExpressSubmissionDate]	2013-05-30							
Comment[GEOLastUpdateDate]	2014-01-01							
Comment[AEExperimentType]	transcription profiling by array							
SDRF File	E-GEOD-47542.sdrf.txt