Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [cell line] Characteristics [cell type] Term Source REF Term Accession Number Characteristics [experiment type] Characteristics [induction time] Characteristics [organism] Term Source REF Term Accession Number Characteristics [sex] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Protocol REF Term Source REF Scan Name Comment [ENA_RUN] Comment [FASTQ_URI] Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [CELL LINE] FactorValue [CELL TYPE] Term Source REF Term Accession Number FactorValue [EXPERIMENT TYPE] FactorValue [INDUCTION TIME] FactorValue [SEX] Term Source REF Term Accession Number GSM1141201 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 48hr retinoic acid Female-48hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 48 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141201 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141201 SRX277979 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850654_2.fastq.gz SRR850654 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850654/SRR850654_2.fastq.gz GSM1141201_Female-48hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 48 hours female EFO EFO_0001265 GSM1141201 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 48hr retinoic acid Female-48hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 48 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141201 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141201 SRX277979 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850654_1.fastq.gz SRR850654 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850654/SRR850654_1.fastq.gz GSM1141201_Female-48hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 48 hours female EFO EFO_0001265 GSM1141200 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 24hr retinoic acid Female-24hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 24 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141200 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141200 SRX277978 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850653_2.fastq.gz SRR850653 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850653/SRR850653_2.fastq.gz GSM1141200_Female-24hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 24 hours female EFO EFO_0001265 GSM1141200 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 24hr retinoic acid Female-24hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 24 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141200 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141200 SRX277978 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850653_1.fastq.gz SRR850653 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850653/SRR850653_1.fastq.gz GSM1141200_Female-24hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 24 hours female EFO EFO_0001265 GSM1141199 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 6hr retinoic acid Female-6hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141199 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141199 SRX277977 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850652_2.fastq.gz SRR850652 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850652/SRR850652_2.fastq.gz GSM1141199_Female-6hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours female EFO EFO_0001265 GSM1141199 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 6hr retinoic acid Female-6hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141199 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141199 SRX277977 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850652_1.fastq.gz SRR850652 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850652/SRR850652_1.fastq.gz GSM1141199_Female-6hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours female EFO EFO_0001265 GSM1141198 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 3hr retinoic acid Female-3hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141198 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141198 SRX277976 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850651_2.fastq.gz SRR850651 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850651/SRR850651_2.fastq.gz GSM1141198_Female-3hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours female EFO EFO_0001265 GSM1141198 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 3hr retinoic acid Female-3hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141198 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141198 SRX277976 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850651_1.fastq.gz SRR850651 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850651/SRR850651_1.fastq.gz GSM1141198_Female-3hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours female EFO EFO_0001265 GSM1141197 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 0hr retinoic acid Female-0hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141197 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141197 SRX277975 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850650_2.fastq.gz SRR850650 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850650/SRR850650_2.fastq.gz GSM1141197_Female-0hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hour female EFO EFO_0001265 GSM1141197 1 RAP-Seq using probes targeting Xist on female embryonic stem cells differentiated with retinoic acid F1 2-1 0hr retinoic acid Female-0hr-Xist F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141197 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141197 SRX277975 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850650_1.fastq.gz SRR850650 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850650/SRR850650_1.fastq.gz GSM1141197_Female-0hr-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hour female EFO EFO_0001265 GSM1141183 1 RAP-Seq using probes targeting Xist on delSXC9 male embryonic stem cells induced with doxycycline delSXC9 3hr dox delSXC9-Xist delSXC9 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141183 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141183 SRX277961 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850636_2.fastq.gz SRR850636 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850636/SRR850636_2.fastq.gz GSM1141183_delSXC9-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip delSXC9 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours male EFO EFO_0001266 GSM1141183 1 RAP-Seq using probes targeting Xist on delSXC9 male embryonic stem cells induced with doxycycline delSXC9 3hr dox delSXC9-Xist delSXC9 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141183 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141183 SRX277961 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850636_1.fastq.gz SRR850636 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850636/SRR850636_1.fastq.gz GSM1141183_delSXC9-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip delSXC9 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours male EFO EFO_0001266 GSM1141182 1 RAP-Seq using probes targeting Xist on delXF6 male embryonic stem cells induced with doxycycline delXF6 3hr dox delXF6-Xist delXF6 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141182 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141182 SRX277960 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850635_2.fastq.gz SRR850635 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850635/SRR850635_2.fastq.gz GSM1141182_delXF6-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip delXF6 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours male EFO EFO_0001266 GSM1141182 1 RAP-Seq using probes targeting Xist on delXF6 male embryonic stem cells induced with doxycycline delXF6 3hr dox delXF6-Xist delXF6 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141182 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141182 SRX277960 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850635_1.fastq.gz SRR850635 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850635/SRR850635_1.fastq.gz GSM1141182_delXF6-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip delXF6 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours male EFO EFO_0001266 GSM1141180 1 RAP-Seq using probes with the same strand as Xist on female mouse lung fibroblasts MLF MLF-ControlSense MLF mouse lung fibroblast Xist Sense Control RAP not applicable Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-4 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141180 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141180 SRX277958 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850633_2.fastq.gz SRR850633 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850633/SRR850633_2.fastq.gz GSM1141180_MLF-SenseControl_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip MLF mouse lung fibroblast Xist Sense Control RAP not applicable female EFO EFO_0001265 GSM1141180 1 RAP-Seq using probes with the same strand as Xist on female mouse lung fibroblasts MLF MLF-ControlSense MLF mouse lung fibroblast Xist Sense Control RAP not applicable Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-4 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141180 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141180 SRX277958 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850633_1.fastq.gz SRR850633 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850633/SRR850633_1.fastq.gz GSM1141180_MLF-SenseControl_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip MLF mouse lung fibroblast Xist Sense Control RAP not applicable female EFO EFO_0001265 GSM1141179 1 RAP-Seq using probes targeting Xist on female mouse lung fibroblasts MLF MLF-Xist MLF mouse lung fibroblast Xist RAP not applicable Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-4 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141179 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141179 SRX277957 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850632_2.fastq.gz SRR850632 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850632/SRR850632_2.fastq.gz GSM1141179_MLF-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip MLF mouse lung fibroblast Xist RAP not applicable female EFO EFO_0001265 GSM1141179 1 RAP-Seq using probes targeting Xist on female mouse lung fibroblasts MLF MLF-Xist MLF mouse lung fibroblast Xist RAP not applicable Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-4 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141179 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141179 SRX277957 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850632_1.fastq.gz SRR850632 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850632/SRR850632_1.fastq.gz GSM1141179_MLF-Xist_vs_Input.W10000_O7500.bigWig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46918/E-GEOD-46918.processed.1.zip MLF mouse lung fibroblast Xist RAP not applicable female EFO EFO_0001265 GSM1141196 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 48hr retinoic acid Female-48hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 48 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141196 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141196 SRX277974 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850649_2.fastq.gz SRR850649 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850649/SRR850649_2.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 48 hours female EFO EFO_0001265 GSM1141196 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 48hr retinoic acid Female-48hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 48 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141196 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141196 SRX277974 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850649_1.fastq.gz SRR850649 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850649/SRR850649_1.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 48 hours female EFO EFO_0001265 GSM1141195 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 24hr retinoic acid Female-24hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 24 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141195 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141195 SRX277973 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850648_2.fastq.gz SRR850648 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850648/SRR850648_2.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 24 hours female EFO EFO_0001265 GSM1141195 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 24hr retinoic acid Female-24hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 24 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141195 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141195 SRX277973 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850648_1.fastq.gz SRR850648 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850648/SRR850648_1.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 24 hours female EFO EFO_0001265 GSM1141194 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 6hr retinoic acid Female-6hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141194 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141194 SRX277972 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850647_2.fastq.gz SRR850647 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850647/SRR850647_2.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 6 hours female EFO EFO_0001265 GSM1141194 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 6hr retinoic acid Female-6hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141194 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141194 SRX277972 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850647_1.fastq.gz SRR850647 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850647/SRR850647_1.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 6 hours female EFO EFO_0001265 GSM1141193 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 3hr retinoic acid Female-3hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141193 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141193 SRX277971 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850646_2.fastq.gz SRR850646 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850646/SRR850646_2.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours female EFO EFO_0001265 GSM1141193 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 3hr retinoic acid Female-3hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141193 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141193 SRX277971 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850646_1.fastq.gz SRR850646 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850646/SRR850646_1.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours female EFO EFO_0001265 GSM1141192 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 0hr retinoic acid Female-0hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141192 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141192 SRX277970 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850645_2.fastq.gz SRR850645 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850645/SRR850645_2.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hour female EFO EFO_0001265 GSM1141192 1 Input DNA (after preclear) for female embryonic stem cells differentiated with retinoic acid F1 2-1 0hr retinoic acid Female-0hr-Input F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-6 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141192 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141192 SRX277970 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850645_1.fastq.gz SRR850645 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850645/SRR850645_1.fastq.gz F1 2-1 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hour female EFO EFO_0001265 GSM1141191 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox 1hr wash 1hr-Washout-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 1 hour and 1 hour wash-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-5 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141191 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141191 SRX277969 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850644_2.fastq.gz SRR850644 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850644/SRR850644_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 1 hour and 1 hour wash-out male EFO EFO_0001266 GSM1141191 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox 1hr wash 1hr-Washout-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 1 hour and 1 hour wash-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-5 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141191 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141191 SRX277969 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850644_1.fastq.gz SRR850644 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850644/SRR850644_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 1 hour and 1 hour wash-out male EFO EFO_0001266 GSM1141190 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox 0hr-Washout-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 1 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141190 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141190 SRX277968 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850643_2.fastq.gz SRR850643 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850643/SRR850643_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 1 hour male EFO EFO_0001266 GSM1141190 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox 0hr-Washout-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 1 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141190 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141190 SRX277968 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850643_1.fastq.gz SRR850643 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850643/SRR850643_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 1 hour male EFO EFO_0001266 GSM1141189 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox NoDox-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141189 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141189 SRX277967 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850642_2.fastq.gz SRR850642 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850642/SRR850642_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hours male EFO EFO_0001266 GSM1141189 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox NoDox-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141189 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141189 SRX277967 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850642_1.fastq.gz SRR850642 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850642/SRR850642_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hours male EFO EFO_0001266 GSM1141188 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox 1hr wash 1hr-Washout-Xist pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour and 1 hour wash-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-5 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141188 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141188 SRX277966 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850641_2.fastq.gz SRR850641 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850641/SRR850641_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour and 1 hour wash-out male EFO EFO_0001266 GSM1141188 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox 1hr wash 1hr-Washout-Xist pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour and 1 hour wash-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-5 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141188 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141188 SRX277966 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850641_1.fastq.gz SRR850641 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850641/SRR850641_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour and 1 hour wash-out male EFO EFO_0001266 GSM1141187 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox 0hr-Washout-Xist pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141187 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141187 SRX277965 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850640_2.fastq.gz SRR850640 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850640/SRR850640_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour male EFO EFO_0001266 GSM1141187 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox 0hr-Washout-Xist pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141187 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141187 SRX277965 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850640_1.fastq.gz SRR850640 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850640/SRR850640_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour male EFO EFO_0001266 GSM1141186 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox NoDox-Xist pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141186 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141186 SRX277964 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850639_2.fastq.gz SRR850639 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850639/SRR850639_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours male EFO EFO_0001266 GSM1141186 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox NoDox-Xist pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141186 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141186 SRX277964 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850639_1.fastq.gz SRR850639 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850639/SRR850639_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours male EFO EFO_0001266 GSM1141185 1 Input DNA (after preclear) for delSXC9 male embryonic stem cells induced with doxycycline delSXC9 3hr dox delSXC9-Input delSXC9 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141185 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141185 SRX277963 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850638_2.fastq.gz SRR850638 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850638/SRR850638_2.fastq.gz delSXC9 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours male EFO EFO_0001266 GSM1141185 1 Input DNA (after preclear) for delSXC9 male embryonic stem cells induced with doxycycline delSXC9 3hr dox delSXC9-Input delSXC9 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141185 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141185 SRX277963 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850638_1.fastq.gz SRR850638 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850638/SRR850638_1.fastq.gz delSXC9 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours male EFO EFO_0001266 GSM1141184 1 Input DNA (after preclear) for delXF6 male embryonic stem cells induced with doxycycline delXF6 3hr dox delXF6-Input delXF6 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141184 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141184 SRX277962 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850637_2.fastq.gz SRR850637 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850637/SRR850637_2.fastq.gz delXF6 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours male EFO EFO_0001266 GSM1141184 1 Input DNA (after preclear) for delXF6 male embryonic stem cells induced with doxycycline delXF6 3hr dox delXF6-Input delXF6 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141184 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141184 SRX277962 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850637_1.fastq.gz SRR850637 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850637/SRR850637_1.fastq.gz delXF6 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours male EFO EFO_0001266 GSM1141181 1 Input DNA (after preclear) for female mouse lung fibroblasts MLF MLF-Input MLF mouse lung fibroblast Input not applicable Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-4 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141181 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141181 SRX277959 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850634_2.fastq.gz SRR850634 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850634/SRR850634_2.fastq.gz MLF mouse lung fibroblast Input not applicable female EFO EFO_0001265 GSM1141181 1 Input DNA (after preclear) for female mouse lung fibroblasts MLF MLF-Input MLF mouse lung fibroblast Input not applicable Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE46918-4 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141181 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141181 SRX277959 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850634_1.fastq.gz SRR850634 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850634/SRR850634_1.fastq.gz MLF mouse lung fibroblast Input not applicable female EFO EFO_0001265 GSM1141178 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 6hr dox pSM33-6hr-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141178 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141178 SRX277956 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850631_2.fastq.gz SRR850631 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850631/SRR850631_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 6 hours male EFO EFO_0001266 GSM1141178 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 6hr dox pSM33-6hr-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141178 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141178 SRX277956 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850631_1.fastq.gz SRR850631 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850631/SRR850631_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 6 hours male EFO EFO_0001266 GSM1141177 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 3hr dox pSM33-3hr-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141177 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141177 SRX277955 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850630_2.fastq.gz SRR850630 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850630/SRR850630_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours male EFO EFO_0001266 GSM1141177 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 3hr dox pSM33-3hr-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141177 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141177 SRX277955 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850630_1.fastq.gz SRR850630 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850630/SRR850630_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 3 hours male EFO EFO_0001266 GSM1141176 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 2hr dox pSM33-2hr-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 2 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141176 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141176 SRX277954 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850629_2.fastq.gz SRR850629 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850629/SRR850629_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 2 hours male EFO EFO_0001266 GSM1141176 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 2hr dox pSM33-2hr-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 2 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141176 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141176 SRX277954 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850629_1.fastq.gz SRR850629 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850629/SRR850629_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 2 hours male EFO EFO_0001266 GSM1141175 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox pSM33-0hr-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141175 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141175 SRX277953 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850628_2.fastq.gz SRR850628 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850628/SRR850628_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hours male EFO EFO_0001266 GSM1141175 1 Input DNA (after preclear) for pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox pSM33-0hr-Input pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141175 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141175 SRX277953 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850628_1.fastq.gz SRR850628 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850628/SRR850628_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Input 0 hours male EFO EFO_0001266 GSM1141174 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 6hr dox pSM33-6hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141174 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141174 SRX277952 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850627_2.fastq.gz SRR850627 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850627/SRR850627_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours male EFO EFO_0001266 GSM1141174 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 6hr dox pSM33-6hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141174 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141174 SRX277952 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850627_1.fastq.gz SRR850627 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850627/SRR850627_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours male EFO EFO_0001266 GSM1141173 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 3hr dox pSM33-3hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141173 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141173 SRX277951 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850626_2.fastq.gz SRR850626 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850626/SRR850626_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours male EFO EFO_0001266 GSM1141173 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 3hr dox pSM33-3hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141173 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141173 SRX277951 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850626_1.fastq.gz SRR850626 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850626/SRR850626_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours male EFO EFO_0001266 GSM1141172 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 2hr dox pSM33-2hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 2 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141172 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141172 SRX277950 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850625_2.fastq.gz SRR850625 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850625/SRR850625_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 2 hours male EFO EFO_0001266 GSM1141172 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 2hr dox pSM33-2hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 2 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141172 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141172 SRX277950 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850625_1.fastq.gz SRR850625 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850625/SRR850625_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 2 hours male EFO EFO_0001266 GSM1141171 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox pSM33-1hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141171 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141171 SRX277949 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850624_2.fastq.gz SRR850624 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850624/SRR850624_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour male EFO EFO_0001266 GSM1141171 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox pSM33-1hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141171 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141171 SRX277949 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850624_1.fastq.gz SRR850624 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850624/SRR850624_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour male EFO EFO_0001266 GSM1141170 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox pSM33-0hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141170 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141170 SRX277948 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850623_2.fastq.gz SRR850623 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850623/SRR850623_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours male EFO EFO_0001266 GSM1141170 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox pSM33-0hr-Xist-R2 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141170 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141170 SRX277948 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850623_1.fastq.gz SRR850623 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850623/SRR850623_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours male EFO EFO_0001266 GSM1141169 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 6hr dox pSM33-6hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141169 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141169 SRX277947 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850622_2.fastq.gz SRR850622 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850622/SRR850622_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours male EFO EFO_0001266 GSM1141169 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 6hr dox pSM33-6hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141169 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141169 SRX277947 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850622_1.fastq.gz SRR850622 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850622/SRR850622_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 6 hours male EFO EFO_0001266 GSM1141168 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 3hr dox pSM33-3hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141168 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141168 SRX277946 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850621_2.fastq.gz SRR850621 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850621/SRR850621_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours male EFO EFO_0001266 GSM1141168 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 3hr dox pSM33-3hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141168 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141168 SRX277946 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850621_1.fastq.gz SRR850621 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850621/SRR850621_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 3 hours male EFO EFO_0001266 GSM1141167 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 2hr dox pSM33-2hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 2 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141167 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141167 SRX277945 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850620_2.fastq.gz SRR850620 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850620/SRR850620_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 2 hours male EFO EFO_0001266 GSM1141167 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 2hr dox pSM33-2hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 2 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141167 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141167 SRX277945 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850620_1.fastq.gz SRR850620 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850620/SRR850620_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 2 hours male EFO EFO_0001266 GSM1141166 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox pSM33-1hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141166 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141166 SRX277944 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850619_2.fastq.gz SRR850619 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850619/SRR850619_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour male EFO EFO_0001266 GSM1141166 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 1hr dox pSM33-1hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141166 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141166 SRX277944 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850619_1.fastq.gz SRR850619 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850619/SRR850619_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 1 hour male EFO EFO_0001266 GSM1141165 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox pSM33-0hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141165 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141165 SRX277943 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850618_2.fastq.gz SRR850618 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850618/SRR850618_2.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours male EFO EFO_0001266 GSM1141165 1 RAP-Seq using probes targeting Xist on pSM33 male embryonic stem cells induced with doxycycline pSM33 0hr dox pSM33-0hr-Xist-R1 pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE46918-1 ArrayExpress P-GSE46918-2 ArrayExpress GSM1141165 extract 1 Illumina HiSeq 2000 other other OTHER other GSM1141165 SRX277943 Illumina HiSeq 2000 (Mus musculus) sequencing assay P-GSE46918-3 ArrayExpress SRR850618_1.fastq.gz SRR850618 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR850/SRR850618/SRR850618_1.fastq.gz pSM33 embryonic stem cell EFO http://purl.org/obo/owl/CL#CL_0002322 Xist RAP 0 hours male EFO EFO_0001266