Source Name	Comment [ENA_SAMPLE]	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [antibody]	Characteristics [antibody lot#]	Characteristics [antibody vendor]	Characteristics [cell lines]	Term Source REF	Term Accession Number	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [ANTIBODY]	FactorValue [ANTIBODY LOT#]	FactorValue [ANTIBODY VENDOR]	FactorValue [CELL LINES]	Term Source REF	Term Accession Number
GSM1139041 1	SRS420242	IP	H9_SOX2_AF2018	H9_SOX2_AF2018	SOX2	KOY0112011	R&D (AF2018)	H9	EFO	EFO_0003045	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139041 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139041	SRX277140	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849839	SRR849839	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849839/SRR849839.fastq.gz	GSM1139041_H9_AF2018_summits.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46837/E-GEOD-46837.processed.1.zip	SOX2	KOY0112011	R&D (AF2018)	H9	EFO	EFO_0003045
GSM1139039 1	SRS420240	IP	HCC95_p63_4A4	HCC95_p63_4A4	p63	J1011	Santa-Cruz (sc-8431)	HCC95	EFO	EFO_0003138	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139039 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139039	SRX277138	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849837	SRR849837	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849837/SRR849837.fastq.gz	GSM1139039_HCC95_4A4_summits.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46837/E-GEOD-46837.processed.1.zip	p63	J1011	Santa-Cruz (sc-8431)	HCC95	EFO	EFO_0003138
GSM1139038 1	SRS420239	IP	HCC95_SOX2_AF2018	HCC95_SOX2_AF2018	SOX2	KOY0112011	R&D (AF2018)	HCC95	EFO	EFO_0003138	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139038 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139038	SRX277137	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849836	SRR849836	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849836/SRR849836.fastq.gz	GSM1139038_HCC95_AF2018_summits.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46837/E-GEOD-46837.processed.1.zip	SOX2	KOY0112011	R&D (AF2018)	HCC95	EFO	EFO_0003138
GSM1139036 1	SRS420237	IP	TT_p63_4A4	TT_p63_4A4	p63	J1011	Santa-Cruz (sc-8431)	TT	EFO	EFO_0002382	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139036 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139036	SRX277135	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849834	SRR849834	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849834/SRR849834.fastq.gz	GSM1139036_TT_4A4_summits.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46837/E-GEOD-46837.processed.1.zip	p63	J1011	Santa-Cruz (sc-8431)	TT	EFO	EFO_0002382
GSM1139035 1	SRS420236	IP	TT_SOX2_AF2018	TT_SOX2_AF2018	SOX2	KOY0112011	R&D (AF2018)	TT	EFO	EFO_0002382	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139035 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139035	SRX277134	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849833	SRR849833	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849833/SRR849833.fastq.gz	GSM1139035_TT_AF2018_summits.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46837/E-GEOD-46837.processed.1.zip	SOX2	KOY0112011	R&D (AF2018)	TT	EFO	EFO_0002382
GSM1139033 1	SRS420234	IP	KYSE70_p63_4A4	KYSE70_p63_4A4	p63	J1011	Santa-Cruz (sc-8431)	KYSE70	  	  	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139033 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139033	SRX277132	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849831	SRR849831	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849831/SRR849831.fastq.gz	GSM1139033_KYSE70_4A4_summits.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46837/E-GEOD-46837.processed.1.zip	p63	J1011	Santa-Cruz (sc-8431)	KYSE70	  	        
GSM1139032 1	SRS420233	IP	KYSE70_SOX2_AF2018	KYSE70_SOX2_AF2018	SOX2	KOY0112011	R&D (AF2018)	KYSE70	  	  	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139032 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139032	SRX277131	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849830	SRR849830	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849830/SRR849830.fastq.gz	GSM1139032_KYSE70_AF2018_summits.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46837/E-GEOD-46837.processed.1.zip	SOX2	KOY0112011	R&D (AF2018)	KYSE70	  	        
GSM1139040 1	SRS420241	Input	H9_input	H9_input	none	  	  	H9	EFO	EFO_0003045	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139040 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139040	SRX277139	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849838	SRR849838	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849838/SRR849838.fastq.gz	  	  	none	not specified	not specified	H9	EFO	EFO_0003045
GSM1139037 1	SRS420238	Input	HCC95_input	HCC95_input	none	  	  	HCC95	EFO	EFO_0003138	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139037 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139037	SRX277136	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849835	SRR849835	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849835/SRR849835.fastq.gz	  	  	none	not specified	not specified	HCC95	EFO	EFO_0003138
GSM1139034 1	SRS420235	Input	TT_input	TT_input	none	  	  	TT	EFO	EFO_0002382	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139034 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139034	SRX277133	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849832	SRR849832	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849832/SRR849832.fastq.gz	  	  	none	not specified	not specified	TT	EFO	EFO_0002382
GSM1139031 1	SRS420232	Input	KYSE70_input	KYSE70_input	none	  	  	KYSE70	  	  	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46837-1	ArrayExpress	P-GSE46837-2	ArrayExpress	GSM1139031 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1139031	SRX277130	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE46837-3	ArrayExpress	SRR849829	SRR849829	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR849/SRR849829/SRR849829.fastq.gz	  	  	none	not specified	not specified	KYSE70