Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Term Source REF	Term Accession Number	Characteristics [disease]	Term Source REF	Term Accession Number	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [compound]	Factor Value[dose]	Unit[concentration unit]
GSM1131237 1	U2OS cells treated with 10 uM Nutlin-3 for 24 hr	U2OS Nutlin-3 treated	U2OS Nutlin-3 treated, Replicate 3	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131237 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131237 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131237	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131237_10517_614_Nutlin_Rep_3_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131237_sample_table.txt norm	GSM1131237_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	Nutlin-3	10	micromolar
GSM1131236 1	U2OS cells treated with 10 uM Nutlin-3 for 24 hr	U2OS Nutlin-3 treated	U2OS Nutlin-3 treated, Replicate 2	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131236 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131236 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131236	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131236_10516_614_Nutlin_Rep_2_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131236_sample_table.txt norm	GSM1131236_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	Nutlin-3	10	micromolar
GSM1131235 1	U2OS cells treated with 10 uM Nutlin-3 for 24 hr	U2OS Nutlin-3 treated	U2OS Nutlin-3 treated, Replicate 1	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131235 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131235 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131235	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131235_10515_614_Nutlin_Rep_1_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131235_sample_table.txt norm	GSM1131235_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	Nutlin-3	10	micromolar
GSM1131234 1	U2OS cells treated with 0.1% DMSO for 24 hr, control for Nutlin-treated cells	U2OS DMSO treated	U2OS DMSO treated, Replicate 3	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131234 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131234 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131234	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131234_10511_614_DMSO_Rep_3_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131234_sample_table.txt norm	GSM1131234_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	DMSO	0.1	percent
GSM1131233 1	U2OS cells treated with 0.1% DMSO for 24 hr, control for Nutlin-treated cells	U2OS DMSO treated	U2OS DMSO treated, Replicate 2	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131233 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131233 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131233	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131233_10510_614_DMSO_Rep_2_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131233_sample_table.txt norm	GSM1131233_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	DMSO	0.1	percent
GSM1131232 1	U2OS cells treated with 0.1% DMSO for 24 hr, control for Nutlin-treated cells	U2OS DMSO treated	U2OS DMSO treated, Replicate 1	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131232 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131232 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131232	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131232_10509_614_DMSO_Rep_1_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131232_sample_table.txt norm	GSM1131232_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	DMSO	0.1	percent
GSM1131231 1	U2OS cells treated with 0.6 ug/ml Doxorubicin for 24 hr	U2OS Doxorubicin treated	U2OS Doxorubicin treated, Replicate 3	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131231 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131231 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131231	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131231_11456_U2OS_Doxo_Rep_3_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131231_sample_table.txt norm	GSM1131231_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	doxorubicin	0.6	microgram per milliliter
GSM1131230 1	U2OS cells treated with 0.6 ug/ml Doxorubicin for 24 hr	U2OS Doxorubicin treated	U2OS Doxorubicin treated, Replicate 2	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131230 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131230 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131230	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131230_11455_U2OS_Doxo_Rep_2_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131230_sample_table.txt norm	GSM1131230_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	doxorubicin	0.6	microgram per milliliter
GSM1131229 1	U2OS cells treated with 0.6 ug/ml Doxorubicin for 24 hr	U2OS Doxorubicin treated	U2OS Doxorubicin treated, Replicate 1	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131229 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131229 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131229	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131229_11454_U2OS_Doxo_Rep_1_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131229_sample_table.txt norm	GSM1131229_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	doxorubicin	0.6	microgram per milliliter
GSM1131228 1	U2OS No Treatment control 24 hr, control for Doxorubicin-treated cells	U2OS No Treatment	U2OS No Treatment, Replicate 3	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131228 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131228 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131228	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131228_11450_U2OS_No_Treatment_Rep_3_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131228_sample_table.txt norm	GSM1131228_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	none	  	        
GSM1131227 1	U2OS No Treatment control 24 hr, control for Doxorubicin-treated cells	U2OS No Treatment	U2OS No Treatment, Replicate 2	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131227 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131227 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131227	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131227_11449_U2OS_No_Treatment_Rep_2_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131227_sample_table.txt norm	GSM1131227_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	none	  	        
GSM1131226 1	U2OS No Treatment control 24 hr, control for Doxorubicin-treated cells	U2OS No Treatment	U2OS No Treatment, Replicate 1	U2OS	EFO	EFO_0002869	osteosarcoma	EFO	EFO_0000637	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE46493-2	ArrayExpress	P-GSE46493-3	ArrayExpress	P-GSE46493-4	ArrayExpress	GSM1131226 extract 1	total RNA	P-GSE46493-5	ArrayExpress	GSM1131226 LE 1	biotin	P-GSE46493-6	ArrayExpress	GSM1131226	A-AFFY-44	ArrayExpress	array assay	P-GSE46493-7	ArrayExpress	GSM1131226_11448_U2OS_No_Treatment_Rep_1_HG-U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.raw.1.zip	P-GSE46493-1	ArrayExpress	GSM1131226_sample_table.txt norm	GSM1131226_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46493/E-GEOD-46493.processed.1.zip	none