Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell type]	Term Source REF	Term Accession Number	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [strain or line]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]
GSM1128537 1	Prdm4-EGFP overexpressor replicate 6	Embryonic stem cells	ESCs-overexp-6	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4-EGFP	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128537 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128537 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128537	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128537_sample_table.txt norm	GSM1128537_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4-EGFP
GSM1128536 1	Prdm4-EGFP overexpressor replicate 5	Embryonic stem cells	ESCs-overexp-5	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4-EGFP	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128536 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128536 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128536	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128536_sample_table.txt norm	GSM1128536_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4-EGFP
GSM1128535 1	Prdm4-EGFP overexpressor replicate 4	Embryonic stem cells	ESCs-overexp-4	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4-EGFP	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128535 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128535 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128535	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128535_sample_table.txt norm	GSM1128535_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4-EGFP
GSM1128534 1	Prdm4-EGFP overexpressor replicate 3	Embryonic stem cells	ESCs-overexp-3	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4-EGFP	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128534 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128534 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128534	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128534_sample_table.txt norm	GSM1128534_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4-EGFP
GSM1128533 1	Prdm4-EGFP overexpressor replicate 2	Embryonic stem cells	ESCs-overexp-2	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4-EGFP	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128533 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128533 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128533	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128533_sample_table.txt norm	GSM1128533_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4-EGFP
GSM1128532 1	Prdm4-EGFP overexpressor replicate 1	Embryonic stem cells	ESCs-overexp-1	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4-EGFP	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128532 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128532 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128532	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128532_sample_table.txt norm	GSM1128532_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4-EGFP
GSM1128531 1	Prdm4 null ESC replicate 4	Embryonic stem cells	ESCs-null-4	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4∆ZF/∆ZF	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128531 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128531 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128531	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128531_sample_table.txt norm	GSM1128531_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4∆ZF/∆ZF
GSM1128530 1	Prdm4 null ESC replicate 3	Embryonic stem cells	ESCs-null-3	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4∆ZF/∆ZF	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128530 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128530 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128530	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128530_sample_table.txt norm	GSM1128530_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4∆ZF/∆ZF
GSM1128529 1	Prdm4 null ESC replicate 2	Embryonic stem cells	ESCs-null-2	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4∆ZF/∆ZF	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128529 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128529 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128529	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128529_sample_table.txt norm	GSM1128529_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4∆ZF/∆ZF
GSM1128528 1	Prdm4 null ESC replicate 1	Embryonic stem cells	ESCs-null-1	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4∆ZF/∆ZF	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128528 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128528 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128528	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128528_sample_table.txt norm	GSM1128528_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4∆ZF/∆ZF
GSM1128527 1	Control ESC replicate 6	Embryonic stem cells	ESCs-cont-6	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128527 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128527 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128527	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128527_sample_table.txt norm	GSM1128527_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4+/+
GSM1128526 1	Control ESC replicate 5	Embryonic stem cells	ESCs-cont-5	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128526 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128526 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128526	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128526_sample_table.txt norm	GSM1128526_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4+/+
GSM1128525 1	Control ESC replicate 4	Embryonic stem cells	ESCs-cont-4	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128525 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128525 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128525	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128525_sample_table.txt norm	GSM1128525_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4+/+
GSM1128524 1	Control ESC replicate 3	Embryonic stem cells	ESCs-cont-3	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128524 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128524 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128524	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128524_sample_table.txt norm	GSM1128524_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4+/+
GSM1128523 1	Control ESC replicate 2	Embryonic stem cells	ESCs-cont-2	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128523 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128523 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128523	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128523_sample_table.txt norm	GSM1128523_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4+/+
GSM1128522 1	Control ESC replicate 1	Embryonic stem cells	ESCs-cont-1	embryonic stem cell	EFO	http://purl.org/obo/owl/CL#CL_0002322	Prdm4+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	129/Sv	EFO	EFO_0000599	P-GSE46308-2	ArrayExpress	P-GSE46308-3	ArrayExpress	GSM1128522 extract 1	total RNA	P-GSE46308-4	ArrayExpress	GSM1128522 LE 1	biotin	P-GSE46308-5	ArrayExpress	GSM1128522	A-MEXP-1175	ArrayExpress	array assay	P-GSE46308-1	ArrayExpress	P-GSE46308-6	ArrayExpress	GSM1128522_sample_table.txt norm	GSM1128522_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46308/E-GEOD-46308.processed.1.zip	Prdm4+/+