Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [age]	Unit [time unit]	Characteristics [cultivar]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [genotype]
GSM1123134 1	MH63-ROOT-3	MH63 seedlings_roots	MH63-ROOT, biological replicate 3	30	day	Minghui 63	non-transgenic control	Oryza sativa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4530	root	P-GSE46086-2	ArrayExpress	P-GSE46086-3	ArrayExpress	GSM1123134 extract 1	total RNA	P-GSE46086-4	ArrayExpress	GSM1123134 LE 1	biotin	P-GSE46086-5	ArrayExpress	GSM1123134	A-AFFY-126	ArrayExpress	array assay	P-GSE46086-6	ArrayExpress	GSM1123134_MH63-ROOT-3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.raw.1.zip	P-GSE46086-1	ArrayExpress	GSM1123134_sample_table.txt norm	GSM1123134_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.processed.1.zip	control
GSM1123133 1	MH63-ROOT-2	MH63 seedlings_roots	MH63-ROOT, biological replicate 2	30	day	Minghui 63	non-transgenic control	Oryza sativa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4530	root	P-GSE46086-2	ArrayExpress	P-GSE46086-3	ArrayExpress	GSM1123133 extract 1	total RNA	P-GSE46086-4	ArrayExpress	GSM1123133 LE 1	biotin	P-GSE46086-5	ArrayExpress	GSM1123133	A-AFFY-126	ArrayExpress	array assay	P-GSE46086-6	ArrayExpress	GSM1123133_MH63-ROOT-2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.raw.1.zip	P-GSE46086-1	ArrayExpress	GSM1123133_sample_table.txt norm	GSM1123133_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.processed.1.zip	control
GSM1123132 1	MH63-ROOT-1	MH63 seedlings_roots	MH63-ROOT, biological replicate 1	30	day	Minghui 63	non-transgenic control	Oryza sativa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4530	root	P-GSE46086-2	ArrayExpress	P-GSE46086-3	ArrayExpress	GSM1123132 extract 1	total RNA	P-GSE46086-4	ArrayExpress	GSM1123132 LE 1	biotin	P-GSE46086-5	ArrayExpress	GSM1123132	A-AFFY-126	ArrayExpress	array assay	P-GSE46086-6	ArrayExpress	GSM1123132_MH63-ROOT-1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.raw.1.zip	P-GSE46086-1	ArrayExpress	GSM1123132_sample_table.txt norm	GSM1123132_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.processed.1.zip	control
GSM1123131 1	HH1-ROOT-3	HH1 seedlings_roots	HH1-ROOT, biological  replicate 3	30	day	Minghui 63	transgenic Huahui 1 (HH1)	Oryza sativa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4530	root	P-GSE46086-2	ArrayExpress	P-GSE46086-3	ArrayExpress	GSM1123131 extract 1	total RNA	P-GSE46086-4	ArrayExpress	GSM1123131 LE 1	biotin	P-GSE46086-5	ArrayExpress	GSM1123131	A-AFFY-126	ArrayExpress	array assay	P-GSE46086-6	ArrayExpress	GSM1123131_HH1-ROOT-3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.raw.1.zip	P-GSE46086-1	ArrayExpress	GSM1123131_sample_table.txt norm	GSM1123131_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.processed.1.zip	transgenic Huahui 1 (HH1)
GSM1123130 1	HH1-ROOT-2	HH1 seedlings_roots	HH1-ROOT, biological  replicate 2	30	day	Minghui 63	transgenic Huahui 1 (HH1)	Oryza sativa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4530	root	P-GSE46086-2	ArrayExpress	P-GSE46086-3	ArrayExpress	GSM1123130 extract 1	total RNA	P-GSE46086-4	ArrayExpress	GSM1123130 LE 1	biotin	P-GSE46086-5	ArrayExpress	GSM1123130	A-AFFY-126	ArrayExpress	array assay	P-GSE46086-6	ArrayExpress	GSM1123130_HH1-ROOT-2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.raw.1.zip	P-GSE46086-1	ArrayExpress	GSM1123130_sample_table.txt norm	GSM1123130_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.processed.1.zip	transgenic Huahui 1 (HH1)
GSM1123129 1	HH1-ROOT-1	HH1 seedlings_roots	HH1-ROOT, biological  replicate 1	30	day	Minghui 63	transgenic Huahui 1 (HH1)	Oryza sativa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4530	root	P-GSE46086-2	ArrayExpress	P-GSE46086-3	ArrayExpress	GSM1123129 extract 1	total RNA	P-GSE46086-4	ArrayExpress	GSM1123129 LE 1	biotin	P-GSE46086-5	ArrayExpress	GSM1123129	A-AFFY-126	ArrayExpress	array assay	P-GSE46086-6	ArrayExpress	GSM1123129_HH1-ROOT-1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.raw.1.zip	P-GSE46086-1	ArrayExpress	GSM1123129_sample_table.txt norm	GSM1123129_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-46086/E-GEOD-46086.processed.1.zip	transgenic Huahui 1 (HH1)