Source Name Comment [Sample_source_name] Comment [Sample_title] Characteristics [cell type] Characteristics [genotype] Characteristics [organism] Term Source REF Term Accession Number Characteristics [sample type] Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [GENOTYPE] FactorValue [SAMPLE TYPE] GSM1116259 2 EH004-REF EH004-LMX1A-mb-E12.5-d vs. EH004-LMX1A-control-mb-E12.5 dissected midbrain, E12.5 Lmx1a-+/+ Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 EH004-REF P-GSE45831-3 ArrayExpress GSM1116259 extract 2 total RNA P-GSE45831-4 ArrayExpress GSM1116259 LE 2 Cy3 P-GSE45831-5 ArrayExpress GSM1116259 A-GEOD-13383 ArrayExpress array assay P-GSE45831-6 ArrayExpress GSM1116259_8661_raw.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.raw.1.zip P-GSE45831-2 ArrayExpress GSM1116259_sample_table.txt norm GSM1116259_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.processed.1.zip Lmx1a-+/+ EH004-REF GSM1116259 1 EH004-LMX1A-drdr-mb-E12.5 EH004-LMX1A-mb-E12.5-d vs. EH004-LMX1A-control-mb-E12.5 dissected midbrain, E12.5 Lmx1a-dr/dr Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 EH004-LMX1A-drdr-mb-E12.5 P-GSE45831-3 ArrayExpress GSM1116259 extract 1 total RNA P-GSE45831-4 ArrayExpress GSM1116259 LE 1 Cy5 P-GSE45831-5 ArrayExpress GSM1116259 A-GEOD-13383 ArrayExpress array assay P-GSE45831-6 ArrayExpress GSM1116259_8661_raw.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.raw.1.zip P-GSE45831-2 ArrayExpress GSM1116259_sample_table.txt norm GSM1116259_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.processed.1.zip Lmx1a-dr/dr EH004-LMX1A-drdr-mb-E12.5 GSM1116258 2 EH004-REF EH004-LMX1A-mb-E12.5-b vs. EH004-LMX1A-control-mb-E12.5 dissected midbrain, E12.5 Lmx1a-+/+ Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 EH004-REF P-GSE45831-3 ArrayExpress GSM1116258 extract 2 total RNA P-GSE45831-4 ArrayExpress GSM1116258 LE 2 Cy3 P-GSE45831-5 ArrayExpress GSM1116258 A-GEOD-13383 ArrayExpress array assay P-GSE45831-6 ArrayExpress GSM1116258_8659_raw.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.raw.1.zip P-GSE45831-2 ArrayExpress GSM1116258_sample_table.txt norm GSM1116258_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.processed.1.zip Lmx1a-+/+ EH004-REF GSM1116258 1 EH004-LMX1A-drdr-mb-E12.5 EH004-LMX1A-mb-E12.5-b vs. EH004-LMX1A-control-mb-E12.5 dissected midbrain, E12.5 Lmx1a-dr/dr Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 EH004-LMX1A-drdr-mb-E12.5 P-GSE45831-3 ArrayExpress GSM1116258 extract 1 total RNA P-GSE45831-4 ArrayExpress GSM1116258 LE 1 Cy5 P-GSE45831-5 ArrayExpress GSM1116258 A-GEOD-13383 ArrayExpress array assay P-GSE45831-6 ArrayExpress GSM1116258_8659_raw.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.raw.1.zip P-GSE45831-2 ArrayExpress GSM1116258_sample_table.txt norm GSM1116258_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.processed.1.zip Lmx1a-dr/dr EH004-LMX1A-drdr-mb-E12.5 GSM1116257 1 EH004-REF EH004-LMX1A-control-mb-E12.5 vs. EH004-LMX1A-mb-E12.5-c dissected midbrain, E12.5 Lmx1a-+/+ Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 EH004-REF P-GSE45831-3 ArrayExpress GSM1116257 extract 1 total RNA P-GSE45831-4 ArrayExpress GSM1116257 LE 1 Cy5 P-GSE45831-5 ArrayExpress GSM1116257 A-GEOD-13383 ArrayExpress array assay P-GSE45831-6 ArrayExpress GSM1116257_8660_raw.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.raw.1.zip P-GSE45831-1 ArrayExpress GSM1116257_sample_table.txt norm GSM1116257_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.processed.1.zip Lmx1a-+/+ EH004-REF GSM1116257 2 EH004-LMX1A-drdr-mb-E12.5 EH004-LMX1A-control-mb-E12.5 vs. EH004-LMX1A-mb-E12.5-c dissected midbrain, E12.5 Lmx1a-dr/dr Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 EH004-LMX1A-drdr-mb-E12.5 P-GSE45831-3 ArrayExpress GSM1116257 extract 2 total RNA P-GSE45831-4 ArrayExpress GSM1116257 LE 2 Cy3 P-GSE45831-5 ArrayExpress GSM1116257 A-GEOD-13383 ArrayExpress array assay P-GSE45831-6 ArrayExpress GSM1116257_8660_raw.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.raw.1.zip P-GSE45831-1 ArrayExpress GSM1116257_sample_table.txt norm GSM1116257_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.processed.1.zip Lmx1a-dr/dr EH004-LMX1A-drdr-mb-E12.5 GSM1116256 1 EH004-REF EH004-LMX1A-control-mb-E12.5 vs. EH004-LMX1A-mb-E12.5-a dissected midbrain, E12.5 Lmx1a-+/+ Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 EH004-REF P-GSE45831-3 ArrayExpress GSM1116256 extract 1 total RNA P-GSE45831-4 ArrayExpress GSM1116256 LE 1 Cy5 P-GSE45831-5 ArrayExpress GSM1116256 A-GEOD-13383 ArrayExpress array assay P-GSE45831-6 ArrayExpress GSM1116256_8658_raw.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.raw.1.zip P-GSE45831-1 ArrayExpress GSM1116256_sample_table.txt norm GSM1116256_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.processed.1.zip Lmx1a-+/+ EH004-REF GSM1116256 2 EH004-LMX1A-drdr-mb-E12.5 EH004-LMX1A-control-mb-E12.5 vs. EH004-LMX1A-mb-E12.5-a dissected midbrain, E12.5 Lmx1a-dr/dr Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 EH004-LMX1A-drdr-mb-E12.5 P-GSE45831-3 ArrayExpress GSM1116256 extract 2 total RNA P-GSE45831-4 ArrayExpress GSM1116256 LE 2 Cy3 P-GSE45831-5 ArrayExpress GSM1116256 A-GEOD-13383 ArrayExpress array assay P-GSE45831-6 ArrayExpress GSM1116256_8658_raw.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.raw.1.zip P-GSE45831-1 ArrayExpress GSM1116256_sample_table.txt norm GSM1116256_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45831/E-GEOD-45831.processed.1.zip Lmx1a-dr/dr EH004-LMX1A-drdr-mb-E12.5