Source Name Comment [ENA_SAMPLE] Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [cell line] Term Source REF Term Accession Number Characteristics [cell type] Term Source REF Term Accession Number Characteristics [dsn time] Characteristics [organism] Term Source REF Term Accession Number Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Protocol REF Term Source REF Scan Name Comment [ENA_RUN] FactorValue [CELL LINE] Term Source REF Term Accession Number FactorValue [DSN TIME] GSM1102640 1 SRS402947 Bidirectional total RNA SW1398 Colorectal cancer cell line SW1398 total RNA SW1398 Colorectal Cancer EFO EFO_0000365 5h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102640 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102640 SRX252544 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787312 SRR787312 SW1398 5h GSM1102639 1 SRS402946 Bidirectional total RNA SW480 Colorectal cancer cell line SW480 total RNA SW480 EFO EFO_0002083 Colorectal Cancer EFO EFO_0000365 5h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102639 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102639 SRX252543 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787311 SRR787311 SW480 EFO EFO_0002083 5h GSM1102638 1 SRS402945 Bidirectional total RNA Colo320 Colorectal cancer cell line Colo320 total RNA Colo320 Colorectal Cancer EFO EFO_0000365 5h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102638 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102638 SRX252542 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787310 SRR787310 Colo320 5h GSM1102637 1 SRS402944 Bidirectional total RNA Colo205 Colorectal cancer cell line Colo205 total RNA COLO205 EFO EFO_0003082 Colorectal Cancer EFO EFO_0000365 5h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102637 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102637 SRX252541 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787309 SRR787309 COLO205 EFO EFO_0003082 5h GSM1102636 1 SRS402943 Bidirectional total RNA LS513 Colorectal cancer cell line LS513 total RNA LS513 Colorectal Cancer EFO EFO_0000365 5h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102636 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102636 SRX252540 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787308 SRR787308 LS513 5h GSM1102635 1 SRS402942 Bidirectional total RNA RKO Colorectal cancer cell line RKO total RNA RKO EFO EFO_0001232 Colorectal Cancer EFO EFO_0000365 5h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102635 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102635 SRX252539 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787307 SRR787307 RKO EFO EFO_0001232 5h GSM1102634 1 SRS402941 Bidirectional total RNA HT29 Colorectal cancer cell line HT29 total RNA HT29 Colorectal Cancer EFO EFO_0000365 5h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102634 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102634 SRX252538 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787306 SRR787306 HT29 5h GSM1102633 1 SRS402940 Bidirectional PolyA mRNA HCT116 DNMT1/3b double knockout DKO polyA mRNA HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102633 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq polyA RNA GSM1102633 SRX252537 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787305 SRR787305 HCT116 EFO EFO_0002824 - GSM1102632 1 SRS402939 Bidirectional total RNA HCT116 DNMT1/3b double knockout DKO total RNA HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 5h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102632 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102632 SRX252536 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787304 SRR787304 HCT116 EFO EFO_0002824 5h GSM1102631 1 SRS402938 Bidirectional polyA mRNA HCT116 Colorectal cancer cell line HCT116 polyA mRNA HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102631 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq polyA RNA GSM1102631 SRX252535 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787303 SRR787303 HCT116 EFO EFO_0002824 - GSM1102630 1 SRS402937 Bidirectional total RNA HCT116 Colorectal cancer cell line HCT116 total RNA 11h DSN HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 11h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102630 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102630 SRX252534 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787302 SRR787302 HCT116 EFO EFO_0002824 11h GSM1102629 1 SRS402936 Bidirectional total RNA HCT116 Colorectal cancer cell line HCT116 total RNA 10h DSN HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 10h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102629 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102629 SRX252533 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787301 SRR787301 HCT116 EFO EFO_0002824 10h GSM1102628 1 SRS402935 Bidirectional total RNA HCT116 Colorectal cancer cell line HCT116 total RNA 9h DSN HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 9h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102628 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102628 SRX252532 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787300 SRR787300 HCT116 EFO EFO_0002824 9h GSM1102627 1 SRS402934 Bidirectional total RNA HCT116 Colorectal cancer cell line HCT116 total RNA 8h DSN HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 8h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102627 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102627 SRX252531 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787299 SRR787299 HCT116 EFO EFO_0002824 8h GSM1102626 1 SRS402933 Bidirectional total RNA HCT116 Colorectal cancer cell line HCT116 total RNA 7h DSN HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 7h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102626 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102626 SRX252530 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787298 SRR787298 HCT116 EFO EFO_0002824 7h GSM1102625 1 SRS402932 Bidirectional total RNA HCT116 Colorectal cancer cell line HCT116 total RNA 6h DSN HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 6h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102625 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102625 SRX252529 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787297 SRR787297 HCT116 EFO EFO_0002824 6h GSM1102624 1 SRS402931 Bidirectional total RNA HCT116 Colorectal cancer cell line HCT116 total RNA 5h DSN HCT116 EFO EFO_0002824 Colorectal Cancer EFO EFO_0000365 5h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE45332-1 ArrayExpress GSM1102624 extract 1 Illumina Genome Analyzer IIx cDNA transcriptomic RNA-Seq total RNA GSM1102624 SRX252528 Illumina Genome Analyzer IIx (Homo sapiens) sequencing assay P-GSE45332-2 ArrayExpress SRR787296 SRR787296 HCT116 EFO EFO_0002824 5h