Comment[ArrayExpressAccession] E-GEOD-44974 MAGE-TAB Version 1.1 Public Release Date 2014-10-30 Investigation Title Genome-wide genotyping and CNV scan in IgA Nephropathy patients. Comment[Submitted Name] Genome-wide genotyping and CNV scan in IgA Nephropathy patients. Experiment Description Immunoglobulin A Nephropathy (IgAN) is a complex multifactorial disease whose genetic bases remain unknown. Distinct linkage and genome-wide association studies in both familial and sporadic IgAN suggest that there is a strong genetic component in IgAN. In this context, an intriguing role could be ascribed to copy number variants (CNVs) that have been recognized as an important source of genetic variation in humans. Here, we performed a whole-genome screening of CNVs in IgAN patients, their healthy relatives and healthy subjects (HS). A total of 217 individuals consisting of 51 IgAN cases and 166 healthy relatives were included in the initial screening. The high-throughput analysis of structural genetic variations, to find concordant aberrations across classes of samples, identified 178 IgAN-specific aberrations, specifically 114 loss and 64 gain. Several CNVs overlapped with regions evidenced by previous genome-wide genetic studies. Moreover, we found that IgAN patients characterized by deteriorated renal function carried low copy numbers of a CNV in chromosome 3 (chr3_loss:52031010-52260722). This CNV contained the TLR9 gene whose expression significantly correlated with the loss aberration in patients with progressive renal damage. Conversely, IgAN patients with normal renal function had no chr3_loss:52031010-52260722 and the TLR9 mRNA was expressed at the same level as in HS, still maintaining a strong correlation with the CNV. In conclusion, here we performed the first genome-wide CNV study in IgAN identifying some structural variants specific to IgAN patients and providing a collection of new candidate genes and loci that could help to dissect the complex genomic setting of the disease. Moreover, we identified a specific CNV, spanning the TLR9 gene, which could explain the disease severity in IgAN patients. To perform a genome-wide CNV study in IgAN identifying some structural variants specific to IgAN patients and providing a collection of new candidate genes and loci that could help to dissect the complex genomic setting of the disease. Term Source Name ArrayExpress EFO Term Source File http://www.ebi.ac.uk/arrayexpress/ http://www.ebi.ac.uk/efo/efo.owl Person Last Name Sallustio Sallustio Cox Person First Name Fabio Fabio Sharon Person Mid Initials N Person Email f.sallustio@nephro.uniba.it Person Affiliation University of Bari Person Address University of Bari, Piazza G. Cesare N°11, Bari, Bari, Italy Person Roles submitter Protocol Name P-GSE44974-110 P-GSE44974-151 P-GSE44974-76 P-GSE44974-196 P-GSE44974-72 P-GSE44974-92 P-GSE44974-116 P-GSE44974-21 P-GSE44974-189 P-GSE44974-170 P-GSE44974-1 P-GSE44974-19 P-GSE44974-55 P-GSE44974-127 P-GSE44974-128 P-GSE44974-78 P-GSE44974-100 P-GSE44974-112 P-GSE44974-140 P-GSE44974-94 P-GSE44974-70 P-GSE44974-35 P-GSE44974-102 P-GSE44974-32 P-GSE44974-15 P-GSE44974-198 P-GSE44974-197 P-GSE44974-107 P-GSE44974-141 P-GSE44974-41 P-GSE44974-93 P-GSE44974-210 P-GSE44974-132 P-GSE44974-187 P-GSE44974-67 P-GSE44974-48 P-GSE44974-39 P-GSE44974-149 P-GSE44974-90 P-GSE44974-166 P-GSE44974-61 P-GSE44974-195 P-GSE44974-154 P-GSE44974-96 P-GSE44974-182 P-GSE44974-108 P-GSE44974-43 P-GSE44974-124 P-GSE44974-23 P-GSE44974-82 P-GSE44974-131 P-GSE44974-192 P-GSE44974-133 P-GSE44974-5 P-GSE44974-30 P-GSE44974-9 P-GSE44974-7 P-GSE44974-73 P-GSE44974-95 P-GSE44974-28 P-GSE44974-130 P-GSE44974-171 P-GSE44974-190 P-GSE44974-24 P-GSE44974-25 P-GSE44974-136 P-GSE44974-88 P-GSE44974-68 P-GSE44974-12 P-GSE44974-89 P-GSE44974-54 P-GSE44974-207 P-GSE44974-194 P-GSE44974-31 P-GSE44974-153 P-GSE44974-120 P-GSE44974-211 P-GSE44974-147 P-GSE44974-79 P-GSE44974-193 P-GSE44974-169 P-GSE44974-97 P-GSE44974-137 P-GSE44974-38 P-GSE44974-176 P-GSE44974-159 P-GSE44974-135 P-GSE44974-209 P-GSE44974-17 P-GSE44974-62 P-GSE44974-162 P-GSE44974-10 P-GSE44974-168 P-GSE44974-81 P-GSE44974-6 P-GSE44974-174 P-GSE44974-4 P-GSE44974-143 P-GSE44974-86 P-GSE44974-205 P-GSE44974-109 P-GSE44974-173 P-GSE44974-99 P-GSE44974-8 P-GSE44974-212 P-GSE44974-26 P-GSE44974-204 P-GSE44974-104 P-GSE44974-199 P-GSE44974-22 P-GSE44974-152 P-GSE44974-200 P-GSE44974-217 P-GSE44974-117 P-GSE44974-42 P-GSE44974-80 P-GSE44974-58 P-GSE44974-167 P-GSE44974-45 P-GSE44974-29 P-GSE44974-186 P-GSE44974-183 P-GSE44974-155 P-GSE44974-18 P-GSE44974-71 P-GSE44974-44 P-GSE44974-118 P-GSE44974-85 P-GSE44974-53 P-GSE44974-65 P-GSE44974-175 P-GSE44974-57 P-GSE44974-111 P-GSE44974-105 P-GSE44974-11 P-GSE44974-37 P-GSE44974-148 P-GSE44974-16 P-GSE44974-47 P-GSE44974-20 P-GSE44974-34 P-GSE44974-181 P-GSE44974-213 P-GSE44974-208 P-GSE44974-63 P-GSE44974-165 P-GSE44974-157 P-GSE44974-142 P-GSE44974-115 P-GSE44974-14 P-GSE44974-201 P-GSE44974-123 P-GSE44974-216 P-GSE44974-2 P-GSE44974-77 P-GSE44974-113 P-GSE44974-98 P-GSE44974-122 P-GSE44974-84 P-GSE44974-215 P-GSE44974-172 P-GSE44974-114 P-GSE44974-158 P-GSE44974-33 P-GSE44974-161 P-GSE44974-134 P-GSE44974-52 P-GSE44974-203 P-GSE44974-160 P-GSE44974-145 P-GSE44974-138 P-GSE44974-121 P-GSE44974-69 P-GSE44974-178 P-GSE44974-144 P-GSE44974-50 P-GSE44974-214 P-GSE44974-129 P-GSE44974-91 P-GSE44974-75 P-GSE44974-64 P-GSE44974-185 P-GSE44974-126 P-GSE44974-56 P-GSE44974-66 P-GSE44974-156 P-GSE44974-139 P-GSE44974-13 P-GSE44974-74 P-GSE44974-60 P-GSE44974-164 P-GSE44974-49 P-GSE44974-87 P-GSE44974-163 P-GSE44974-83 P-GSE44974-150 P-GSE44974-125 P-GSE44974-206 P-GSE44974-188 P-GSE44974-146 P-GSE44974-106 P-GSE44974-179 P-GSE44974-51 P-GSE44974-202 P-GSE44974-191 P-GSE44974-59 P-GSE44974-27 P-GSE44974-103 P-GSE44974-184 P-GSE44974-177 P-GSE44974-40 P-GSE44974-46 P-GSE44974-3 P-GSE44974-101 P-GSE44974-119 P-GSE44974-180 P-GSE44974-36 P-GSE44974-219 P-GSE44974-220 P-GSE44974-218 P-GSE44974-221 Protocol Description GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1856.Score = 1856.Theta = 1856.R = 1856.B Allele Freq = 1856.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2025.Score = 2025.Theta = 2025.R = 2025.B Allele Freq = 2025.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1461.Score = 1461.Theta = 1461.R = 1461.B Allele Freq = 1461.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2320.Score = 2320.Theta = 2320.R = 2320.B Allele Freq = 2320.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1457.Score = 1457.Theta = 1457.R = 1457.B Allele Freq = 1457.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1723.Score = 1723.Theta = 1723.R = 1723.B Allele Freq = 1723.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1895.Score = 1895.Theta = 1895.R = 1895.B Allele Freq = 1895.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 244.Score = 244.Theta = 244.R = 244.B Allele Freq = 244.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2247.Score = 2247.Theta = 2247.R = 2247.B Allele Freq = 2247.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2164.Score = 2164.Theta = 2164.R = 2164.B Allele Freq = 2164.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 22.Score = 22.Theta = 22.R = 22.B Allele Freq = 22.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 241.Score = 241.Theta = 241.R = 241.B Allele Freq = 241.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 601.Score = 601.Theta = 601.R = 601.B Allele Freq = 601.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1955.Score = 1955.Theta = 1955.R = 1955.B Allele Freq = 1955.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1965.Score = 1965.Theta = 1965.R = 1965.B Allele Freq = 1965.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1463.Score = 1463.Theta = 1463.R = 1463.B Allele Freq = 1463.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1731.Score = 1731.Theta = 1731.R = 1731.B Allele Freq = 1731.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1858.Score = 1858.Theta = 1858.R = 1858.B Allele Freq = 1858.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2006.Score = 2006.Theta = 2006.R = 2006.B Allele Freq = 2006.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1725.Score = 1725.Theta = 1725.R = 1725.B Allele Freq = 1725.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1454.Score = 1454.Theta = 1454.R = 1454.B Allele Freq = 1454.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 447.Score = 447.Theta = 447.R = 447.B Allele Freq = 447.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1785.Score = 1785.Theta = 1785.R = 1785.B Allele Freq = 1785.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 306.Score = 306.Theta = 306.R = 306.B Allele Freq = 306.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 207.Score = 207.Theta = 207.R = 207.B Allele Freq = 207.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2339.Score = 2339.Theta = 2339.R = 2339.B Allele Freq = 2339.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2321.Score = 2321.Theta = 2321.R = 2321.B Allele Freq = 2321.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1829.Score = 1829.Theta = 1829.R = 1829.B Allele Freq = 1829.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2007.Score = 2007.Theta = 2007.R = 2007.B Allele Freq = 2007.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 499.Score = 499.Theta = 499.R = 499.B Allele Freq = 499.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1724.Score = 1724.Theta = 1724.R = 1724.B Allele Freq = 1724.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2518.Score = 2518.Theta = 2518.R = 2518.B Allele Freq = 2518.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1994.Score = 1994.Theta = 1994.R = 1994.B Allele Freq = 1994.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2224.Score = 2224.Theta = 2224.R = 2224.B Allele Freq = 2224.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1451.Score = 1451.Theta = 1451.R = 1451.B Allele Freq = 1451.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 552.Score = 552.Theta = 552.R = 552.B Allele Freq = 552.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 470.Score = 470.Theta = 470.R = 470.B Allele Freq = 470.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2015.Score = 2015.Theta = 2015.R = 2015.B Allele Freq = 2015.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1721.Score = 1721.Theta = 1721.R = 1721.B Allele Freq = 1721.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2159.Score = 2159.Theta = 2159.R = 2159.B Allele Freq = 2159.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1202.Score = 1202.Theta = 1202.R = 1202.B Allele Freq = 1202.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2318.Score = 2318.Theta = 2318.R = 2318.B Allele Freq = 2318.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2031.Score = 2031.Theta = 2031.R = 2031.B Allele Freq = 2031.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1727.Score = 1727.Theta = 1727.R = 1727.B Allele Freq = 1727.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2213.Score = 2213.Theta = 2213.R = 2213.B Allele Freq = 2213.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1854.Score = 1854.Theta = 1854.R = 1854.B Allele Freq = 1854.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 506.Score = 506.Theta = 506.R = 506.B Allele Freq = 506.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1927.Score = 1927.Theta = 1927.R = 1927.B Allele Freq = 1927.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 246.Score = 246.Theta = 246.R = 246.B Allele Freq = 246.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1651.Score = 1651.Theta = 1651.R = 1651.B Allele Freq = 1651.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1993.Score = 1993.Theta = 1993.R = 1993.B Allele Freq = 1993.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2250.Score = 2250.Theta = 2250.R = 2250.B Allele Freq = 2250.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1995.Score = 1995.Theta = 1995.R = 1995.B Allele Freq = 1995.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 187.Score = 187.Theta = 187.R = 187.B Allele Freq = 187.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 301.Score = 301.Theta = 301.R = 301.B Allele Freq = 301.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 197.Score = 197.Theta = 197.R = 197.B Allele Freq = 197.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 189.Score = 189.Theta = 189.R = 189.B Allele Freq = 189.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1458.Score = 1458.Theta = 1458.R = 1458.B Allele Freq = 1458.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1726.Score = 1726.Theta = 1726.R = 1726.B Allele Freq = 1726.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 253.Score = 253.Theta = 253.R = 253.B Allele Freq = 253.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1992.Score = 1992.Theta = 1992.R = 1992.B Allele Freq = 1992.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2165.Score = 2165.Theta = 2165.R = 2165.B Allele Freq = 2165.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2248.Score = 2248.Theta = 2248.R = 2248.B Allele Freq = 2248.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 247.Score = 247.Theta = 247.R = 247.B Allele Freq = 247.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 249.Score = 249.Theta = 249.R = 249.B Allele Freq = 249.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1998.Score = 1998.Theta = 1998.R = 1998.B Allele Freq = 1998.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1683.Score = 1683.Theta = 1683.R = 1683.B Allele Freq = 1683.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1452.Score = 1452.Theta = 1452.R = 1452.B Allele Freq = 1452.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 202.Score = 202.Theta = 202.R = 202.B Allele Freq = 202.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1720.Score = 1720.Theta = 1720.R = 1720.B Allele Freq = 1720.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 600.Score = 600.Theta = 600.R = 600.B Allele Freq = 600.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2431.Score = 2431.Theta = 2431.R = 2431.B Allele Freq = 2431.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2252.Score = 2252.Theta = 2252.R = 2252.B Allele Freq = 2252.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 303.Score = 303.Theta = 303.R = 303.B Allele Freq = 303.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2030.Score = 2030.Theta = 2030.R = 2030.B Allele Freq = 2030.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1915.Score = 1915.Theta = 1915.R = 1915.B Allele Freq = 1915.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2519.Score = 2519.Theta = 2519.R = 2519.B Allele Freq = 2519.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2013.Score = 2013.Theta = 2013.R = 2013.B Allele Freq = 2013.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1464.Score = 1464.Theta = 1464.R = 1464.B Allele Freq = 1464.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2251.Score = 2251.Theta = 2251.R = 2251.B Allele Freq = 2251.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2162.Score = 2162.Theta = 2162.R = 2162.B Allele Freq = 2162.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1728.Score = 1728.Theta = 1728.R = 1728.B Allele Freq = 1728.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1999.Score = 1999.Theta = 1999.R = 1999.B Allele Freq = 1999.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 462.Score = 462.Theta = 462.R = 462.B Allele Freq = 462.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2173.Score = 2173.Theta = 2173.R = 2173.B Allele Freq = 2173.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2036.Score = 2036.Theta = 2036.R = 2036.B Allele Freq = 2036.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1997.Score = 1997.Theta = 1997.R = 1997.B Allele Freq = 1997.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2517.Score = 2517.Theta = 2517.R = 2517.B Allele Freq = 2517.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 211.Score = 211.Theta = 211.R = 211.B Allele Freq = 211.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1215.Score = 1215.Theta = 1215.R = 1215.B Allele Freq = 1215.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2073.Score = 2073.Theta = 2073.R = 2073.B Allele Freq = 2073.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 198.Score = 198.Theta = 198.R = 198.B Allele Freq = 198.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2161.Score = 2161.Theta = 2161.R = 2161.B Allele Freq = 2161.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1466.Score = 1466.Theta = 1466.R = 1466.B Allele Freq = 1466.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 188.Score = 188.Theta = 188.R = 188.B Allele Freq = 188.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2168.Score = 2168.Theta = 2168.R = 2168.B Allele Freq = 2168.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 185.Score = 185.Theta = 185.R = 185.B Allele Freq = 185.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2009.Score = 2009.Theta = 2009.R = 2009.B Allele Freq = 2009.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1664.Score = 1664.Theta = 1664.R = 1664.B Allele Freq = 1664.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2429.Score = 2429.Theta = 2429.R = 2429.B Allele Freq = 2429.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1855.Score = 1855.Theta = 1855.R = 1855.B Allele Freq = 1855.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2167.Score = 2167.Theta = 2167.R = 2167.B Allele Freq = 2167.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1730.Score = 1730.Theta = 1730.R = 1730.B Allele Freq = 1730.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 191.Score = 191.Theta = 191.R = 191.B Allele Freq = 191.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2520.Score = 2520.Theta = 2520.R = 2520.B Allele Freq = 2520.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 250.Score = 250.Theta = 250.R = 250.B Allele Freq = 250.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2400.Score = 2400.Theta = 2400.R = 2400.B Allele Freq = 2400.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1826.Score = 1826.Theta = 1826.R = 1826.B Allele Freq = 1826.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2373.Score = 2373.Theta = 2373.R = 2373.B Allele Freq = 2373.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 245.Score = 245.Theta = 245.R = 245.B Allele Freq = 245.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2029.Score = 2029.Theta = 2029.R = 2029.B Allele Freq = 2029.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2396.Score = 2396.Theta = 2396.R = 2396.B Allele Freq = 2396.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2558.Score = 2558.Theta = 2558.R = 2558.B Allele Freq = 2558.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1896.Score = 1896.Theta = 1896.R = 1896.B Allele Freq = 1896.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 504.Score = 504.Theta = 504.R = 504.B Allele Freq = 504.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1465.Score = 1465.Theta = 1465.R = 1465.B Allele Freq = 1465.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 782.Score = 782.Theta = 782.R = 782.B Allele Freq = 782.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2160.Score = 2160.Theta = 2160.R = 2160.B Allele Freq = 2160.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 547.Score = 547.Theta = 547.R = 547.B Allele Freq = 547.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 254.Score = 254.Theta = 254.R = 254.B Allele Freq = 254.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2223.Score = 2223.Theta = 2223.R = 2223.B Allele Freq = 2223.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2220.Score = 2220.Theta = 2220.R = 2220.B Allele Freq = 2220.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2032.Score = 2032.Theta = 2032.R = 2032.B Allele Freq = 2032.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 215.Score = 215.Theta = 215.R = 215.B Allele Freq = 215.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1455.Score = 1455.Theta = 1455.R = 1455.B Allele Freq = 1455.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 546.Score = 546.Theta = 546.R = 546.B Allele Freq = 546.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1897.Score = 1897.Theta = 1897.R = 1897.B Allele Freq = 1897.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1654.Score = 1654.Theta = 1654.R = 1654.B Allele Freq = 1654.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 599.Score = 599.Theta = 599.R = 599.B Allele Freq = 599.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1449.Score = 1449.Theta = 1449.R = 1449.B Allele Freq = 1449.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2172.Score = 2172.Theta = 2172.R = 2172.B Allele Freq = 2172.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 779.Score = 779.Theta = 779.R = 779.B Allele Freq = 779.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1857.Score = 1857.Theta = 1857.R = 1857.B Allele Freq = 1857.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1827.Score = 1827.Theta = 1827.R = 1827.B Allele Freq = 1827.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 201.Score = 201.Theta = 201.R = 201.B Allele Freq = 201.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 450.Score = 450.Theta = 450.R = 450.B Allele Freq = 450.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2014.Score = 2014.Theta = 2014.R = 2014.B Allele Freq = 2014.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 209.Score = 209.Theta = 209.R = 209.B Allele Freq = 209.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 551.Score = 551.Theta = 551.R = 551.B Allele Freq = 551.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 242.Score = 242.Theta = 242.R = 242.B Allele Freq = 242.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 420.Score = 420.Theta = 420.R = 420.B Allele Freq = 420.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2210.Score = 2210.Theta = 2210.R = 2210.B Allele Freq = 2210.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2535.Score = 2535.Theta = 2535.R = 2535.B Allele Freq = 2535.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2432.Score = 2432.Theta = 2432.R = 2432.B Allele Freq = 2432.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1216.Score = 1216.Theta = 1216.R = 1216.B Allele Freq = 1216.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2151.Score = 2151.Theta = 2151.R = 2151.B Allele Freq = 2151.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2034.Score = 2034.Theta = 2034.R = 2034.B Allele Freq = 2034.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2008.Score = 2008.Theta = 2008.R = 2008.B Allele Freq = 2008.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1876.Score = 1876.Theta = 1876.R = 1876.B Allele Freq = 1876.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 205.Score = 205.Theta = 205.R = 205.B Allele Freq = 205.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2397.Score = 2397.Theta = 2397.R = 2397.B Allele Freq = 2397.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1918.Score = 1918.Theta = 1918.R = 1918.B Allele Freq = 1918.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2557.Score = 2557.Theta = 2557.R = 2557.B Allele Freq = 2557.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 156.Score = 156.Theta = 156.R = 156.B Allele Freq = 156.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1462.Score = 1462.Theta = 1462.R = 1462.B Allele Freq = 1462.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1859.Score = 1859.Theta = 1859.R = 1859.B Allele Freq = 1859.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1729.Score = 1729.Theta = 1729.R = 1729.B Allele Freq = 1729.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1917.Score = 1917.Theta = 1917.R = 1917.B Allele Freq = 1917.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1653.Score = 1653.Theta = 1653.R = 1653.B Allele Freq = 1653.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2542.Score = 2542.Theta = 2542.R = 2542.B Allele Freq = 2542.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2166.Score = 2166.Theta = 2166.R = 2166.B Allele Freq = 2166.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1860.Score = 1860.Theta = 1860.R = 1860.B Allele Freq = 1860.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2035.Score = 2035.Theta = 2035.R = 2035.B Allele Freq = 2035.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 418.Score = 418.Theta = 418.R = 418.B Allele Freq = 418.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2039.Score = 2039.Theta = 2039.R = 2039.B Allele Freq = 2039.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1996.Score = 1996.Theta = 1996.R = 1996.B Allele Freq = 1996.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 597.Score = 597.Theta = 597.R = 597.B Allele Freq = 597.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2399.Score = 2399.Theta = 2399.R = 2399.B Allele Freq = 2399.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2038.Score = 2038.Theta = 2038.R = 2038.B Allele Freq = 2038.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2011.Score = 2011.Theta = 2011.R = 2011.B Allele Freq = 2011.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2000.Score = 2000.Theta = 2000.R = 2000.B Allele Freq = 2000.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1916.Score = 1916.Theta = 1916.R = 1916.B Allele Freq = 1916.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1453.Score = 1453.Theta = 1453.R = 1453.B Allele Freq = 1453.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2207.Score = 2207.Theta = 2207.R = 2207.B Allele Freq = 2207.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2010.Score = 2010.Theta = 2010.R = 2010.B Allele Freq = 2010.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 557.Score = 557.Theta = 557.R = 557.B Allele Freq = 557.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2541.Score = 2541.Theta = 2541.R = 2541.B Allele Freq = 2541.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1966.Score = 1966.Theta = 1966.R = 1966.B Allele Freq = 1966.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1722.Score = 1722.Theta = 1722.R = 1722.B Allele Freq = 1722.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1460.Score = 1460.Theta = 1460.R = 1460.B Allele Freq = 1460.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1380.Score = 1380.Theta = 1380.R = 1380.B Allele Freq = 1380.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2222.Score = 2222.Theta = 2222.R = 2222.B Allele Freq = 2222.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1934.Score = 1934.Theta = 1934.R = 1934.B Allele Freq = 1934.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 761.Score = 761.Theta = 761.R = 761.B Allele Freq = 761.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1450.Score = 1450.Theta = 1450.R = 1450.B Allele Freq = 1450.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2033.Score = 2033.Theta = 2033.R = 2033.B Allele Freq = 2033.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2001.Score = 2001.Theta = 2001.R = 2001.B Allele Freq = 2001.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 203.Score = 203.Theta = 203.R = 203.B Allele Freq = 203.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1459.Score = 1459.Theta = 1459.R = 1459.B Allele Freq = 1459.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 789.Score = 789.Theta = 789.R = 789.B Allele Freq = 789.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2150.Score = 2150.Theta = 2150.R = 2150.B Allele Freq = 2150.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 553.Score = 553.Theta = 553.R = 553.B Allele Freq = 553.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1682.Score = 1682.Theta = 1682.R = 1682.B Allele Freq = 1682.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2144.Score = 2144.Theta = 2144.R = 2144.B Allele Freq = 2144.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1652.Score = 1652.Theta = 1652.R = 1652.B Allele Freq = 1652.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2024.Score = 2024.Theta = 2024.R = 2024.B Allele Freq = 2024.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1928.Score = 1928.Theta = 1928.R = 1928.B Allele Freq = 1928.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2430.Score = 2430.Theta = 2430.R = 2430.B Allele Freq = 2430.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2246.Score = 2246.Theta = 2246.R = 2246.B Allele Freq = 2246.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2012.Score = 2012.Theta = 2012.R = 2012.B Allele Freq = 2012.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1828.Score = 1828.Theta = 1828.R = 1828.B Allele Freq = 1828.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2208.Score = 2208.Theta = 2208.R = 2208.B Allele Freq = 2208.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 581.Score = 581.Theta = 581.R = 581.B Allele Freq = 581.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2398.Score = 2398.Theta = 2398.R = 2398.B Allele Freq = 2398.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2249.Score = 2249.Theta = 2249.R = 2249.B Allele Freq = 2249.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 788.Score = 788.Theta = 788.R = 788.B Allele Freq = 788.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 251.Score = 251.Theta = 251.R = 251.B Allele Freq = 251.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1813.Score = 1813.Theta = 1813.R = 1813.B Allele Freq = 1813.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2221.Score = 2221.Theta = 2221.R = 2221.B Allele Freq = 2221.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2206.Score = 2206.Theta = 2206.R = 2206.B Allele Freq = 2206.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 497.Score = 497.Theta = 497.R = 497.B Allele Freq = 497.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 548.Score = 548.Theta = 548.R = 548.B Allele Freq = 548.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 184.Score = 184.Theta = 184.R = 184.B Allele Freq = 184.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1741.Score = 1741.Theta = 1741.R = 1741.B Allele Freq = 1741.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 1914.Score = 1914.Theta = 1914.R = 1914.B Allele Freq = 1914.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 2209.Score = 2209.Theta = 2209.R = 2209.B Allele Freq = 2209.Log R Ratio = GenomeStudio V2011.1 ID_REF = VALUE = Genotype: AA,AB,BB,or NC (no call) 449.Score = 449.Theta = 449.R = 449.B Allele Freq = 449.Log R Ratio = 750ng of genomic DNA was whole-genome amplified in an overnight reaction at 37C using amplification master mix and primer/neutralization mix. After incubation the amplified DNA was fragmented with fragmentation mix, precipitated with isopropanol and precipitation mix and resuspended in hybridization buffer. Resuspended DNA was loaded onto BeadChips arrays. After overnight incubation at 48C, single-base extension and allele-specific staining was performed on a Teflow chamber rack system. Genomic DNA was purified from peripheral blood samples by Qiagen Qiamp DNA Blood Midi kit After allele-specific staining BeadChip arrays were coated with XC4/ethanol , dried for 1 hour and scanned on a HiScanSQ Reader (Illumina). Protocol Type normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol 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normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol normalization data transformation protocol labelling protocol hybridization protocol nucleic acid extraction protocol array scanning protocol Experimental Factor Name group family number Experimental Factor Type group family number Comment[SecondaryAccession] GSE44974 Comment[GEOReleaseDate] 2014-10-30 Comment[ArrayExpressSubmissionDate] 2013-03-08 Comment[GEOLastUpdateDate] 2014-10-30 Comment[AEExperimentType] comparative genomic hybridization by array Comment[AEExperimentType] genotyping by array Comment[AdditionalFile:Data1] GSE44974_Signal_intensities.txt SDRF File E-GEOD-44974.sdrf.txt