Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [infect]	Characteristics [cell line]	Characteristics [genotype]	Characteristics [disease]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	Factor Value [infect]	Factor Value [genotype]
GSM1094270 1	gene expression of S. aureus infected HepG2 nt cells	triplicate 3 of S. aureus infected HepG2 nt cells	nt S. aureus 12	Staphylococcus aureus	HepG2	control vector	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094270 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094270 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094270	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094270_E10R003d03_2_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094270_sample_table.txt norm	GSM1094270_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	Staphylococcus aureus	control vector
GSM1094269 1	gene expression of S. aureus infected HepG2 nt cells	triplicate 2 of S. aureus infected HepG2 nt cells	nt S. aureus 11	Staphylococcus aureus	HepG2	control vector	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094269 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094269 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094269	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094269_E10R003d02_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094269_sample_table.txt norm	GSM1094269_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	Staphylococcus aureus	control vector
GSM1094268 1	gene expression of S. aureus infected HepG2 nt cells	triplicate 1 of S. aureus infected HepG2 nt cells	nt S. aureus 10	Staphylococcus aureus	HepG2	control vector	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094268 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094268 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094268	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094268_E10R003d01_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094268_sample_table.txt norm	GSM1094268_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	Staphylococcus aureus	control vector
GSM1094267 1	gene expression of uninfected HepG2 nt cells	triplicate 3 of uninfected HepG2 nt cells	nt control 9	none	HepG2	control vector	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094267 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094267 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094267	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094267_E10R003c03_2_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094267_sample_table.txt norm	GSM1094267_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	none	control vector
GSM1094266 1	gene expression of uninfected HepG2 nt cells	triplicate 2 of uninfected HepG2 nt cells	nt control 8	none	HepG2	control vector	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094266 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094266 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094266	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094266_E10R003c02_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094266_sample_table.txt norm	GSM1094266_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	none	control vector
GSM1094265 1	gene expression of uninfected HepG2 nt cells	triplicate 1 of uninfected HepG2 nt cells	nt control 7	none	HepG2	control vector	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094265 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094265 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094265	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094265_E10R003c01_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094265_sample_table.txt norm	GSM1094265_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	none	control vector
GSM1094264 1	gene expression of S. aureus infected HepG2 HIF-1-/- cells	triplicate 3 of S. aureus infected HepG2 HIF-1-/- cells	HIF-1-/- S. aureus 6	Staphylococcus aureus	HepG2	HIF-1alpha knockdown	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094264 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094264 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094264	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094264_E10R003b03_2_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094264_sample_table.txt norm	GSM1094264_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	Staphylococcus aureus	HIF-1alpha knockdown
GSM1094263 1	gene expression of S. aureus infected HepG2 HIF-1-/- cells	triplicate 2 of S. aureus infected HepG2 HIF-1-/- cells	HIF-1-/- S. aureus 5	Staphylococcus aureus	HepG2	HIF-1alpha knockdown	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094263 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094263 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094263	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094263_E10R003b02_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094263_sample_table.txt norm	GSM1094263_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	Staphylococcus aureus	HIF-1alpha knockdown
GSM1094262 1	gene expression of S. aureus infected HepG2 HIF-1-/- cells	triplicate 1 of S. aureus infected HepG2 HIF-1-/- cells	HIF-1-/- S. aureus 4	Staphylococcus aureus	HepG2	HIF-1alpha knockdown	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094262 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094262 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094262	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094262_E10R003b01_2_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094262_sample_table.txt norm	GSM1094262_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	Staphylococcus aureus	HIF-1alpha knockdown
GSM1094261 1	gene expression of uninfected HepG2 HIF-1-/- cells	triplicate 3 of uninfected HepG2 HIF-1-/-  cells	HIF-1-/- control 3	none	HepG2	HIF-1alpha knockdown	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094261 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094261 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094261	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094261_E10R003a03_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094261_sample_table.txt norm	GSM1094261_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	none	HIF-1alpha knockdown
GSM1094260 1	gene expression of uninfected HepG2 HIF-1-/- cells	triplicate 2 of uninfected HepG2 HIF-1-/- cells	HIF-1-/- control 2	none	HepG2	HIF-1alpha knockdown	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094260 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094260 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094260	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094260_E10R003a02_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094260_sample_table.txt norm	GSM1094260_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	none	HIF-1alpha knockdown
GSM1094259 1	gene expression of uninfected HepG2 HIF-1-/- cells	triplicate 1 of uninfected HepG2 HIF-1-/- cells	HIF-1-/- control 1	none	HepG2	HIF-1alpha knockdown	Hepatocellular carcinoma 	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44943-2	ArrayExpress	P-GSE44943-3	ArrayExpress	P-GSE44943-4	ArrayExpress	GSM1094259 extract 1	total RNA	P-GSE44943-5	ArrayExpress	GSM1094259 LE 1	Biotin	P-GSE44943-6	ArrayExpress	GSM1094259	A-AFFY-141	ArrayExpress	array assay	P-GSE44943-7	ArrayExpress	GSM1094259_E10R003a01_2_HuGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.raw.1.zip	P-GSE44943-1	ArrayExpress	GSM1094259_sample_table.txt norm	GSM1094259_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44943/E-GEOD-44943.processed.1.zip	none	HIF-1alpha knockdown