Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [Organism] Term Source REF Term Accession Number Characteristics [cell type] Characteristics [disease status] Term Source REF Term Accession Number Characteristics [organism part] Term Source REF Term Accession Number Characteristics [patient] Characteristics [reference] Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [CELL TYPE] FactorValue [PATIENT] GSM1092503 1 GBM neurospheres derived from a tumor sample of G63 patient upon 14 days of differentiation G63_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G63 patient upon 14 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092503 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092503 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092503 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092503_1_Exiqon_14223145_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092503_sample_table.txt norm GSM1092503_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G63 patient upon 14 days of differentiation not specified GSM1092503 2 common reference: a pool of all samples G63_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092503 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092503 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092503 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092503_1_Exiqon_14223145_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092503_sample_table.txt norm GSM1092503_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092502 1 GBM neurospheres derived from a tumor sample of G63 patient upon 4 days of differentiation G63_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G63 patient upon 4 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092502 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092502 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092502 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092502_1_Exiqon_14223144_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092502_sample_table.txt norm GSM1092502_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G63 patient upon 4 days of differentiation not specified GSM1092502 2 common reference: a pool of all samples G63_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092502 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092502 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092502 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092502_1_Exiqon_14223144_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092502_sample_table.txt norm GSM1092502_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092501 2 common reference: a pool of all samples G63_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092501 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092501 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092501 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092501_1_Exiqon_14223143_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092501_sample_table.txt norm GSM1092501_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092501 1 GBM neurospheres derived from a tumor sample of G63 patient G63_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G63 patient P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092501 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092501 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092501 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092501_1_Exiqon_14223143_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092501_sample_table.txt norm GSM1092501_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G63 patient not specified GSM1092500 1 GBM neurospheres derived from a tumor sample of G52 patient upon 14 days of differentiation G52_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G52 patient upon 14 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092500 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092500 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092500 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092500_1_Exiqon_14223142_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092500_sample_table.txt norm GSM1092500_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G52 patient upon 14 days of differentiation not specified GSM1092500 2 common reference: a pool of all samples G52_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092500 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092500 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092500 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092500_1_Exiqon_14223142_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092500_sample_table.txt norm GSM1092500_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092499 1 GBM neurospheres derived from a tumor sample of G52 patient upon 4 days of differentiation G52_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G52 patient upon 4 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092499 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092499 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092499 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092499_1_Exiqon_14223141_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092499_sample_table.txt norm GSM1092499_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G52 patient upon 4 days of differentiation not specified GSM1092499 2 common reference: a pool of all samples G52_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092499 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092499 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092499 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092499_1_Exiqon_14223141_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092499_sample_table.txt norm GSM1092499_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092498 2 common reference: a pool of all samples G52_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092498 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092498 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092498 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092498_1_Exiqon_14223140_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092498_sample_table.txt norm GSM1092498_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092498 1 GBM neurospheres derived from a tumor sample of G52 patient G52_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G52 patient P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092498 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092498 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092498 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092498_1_Exiqon_14223140_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092498_sample_table.txt norm GSM1092498_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G52 patient not specified GSM1092497 1 GBM neurospheres derived from a tumor sample of GN1C patient upon 14 days of differentiation GN1C_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of GN1C patient upon 14 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092497 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092497 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092497 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092497_1_Exiqon_14223139_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092497_sample_table.txt norm GSM1092497_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of GN1C patient upon 14 days of differentiation not specified GSM1092497 2 common reference: a pool of all samples GN1C_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092497 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092497 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092497 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092497_1_Exiqon_14223139_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092497_sample_table.txt norm GSM1092497_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092496 1 GBM neurospheres derived from a tumor sample of GN1C patient upon 4 days of differentiation GN1C_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of GN1C patient upon 4 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092496 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092496 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092496 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092496_1_Exiqon_14223138_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092496_sample_table.txt norm GSM1092496_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of GN1C patient upon 4 days of differentiation not specified GSM1092496 2 common reference: a pool of all samples GN1C_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092496 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092496 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092496 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092496_1_Exiqon_14223138_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092496_sample_table.txt norm GSM1092496_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092495 2 common reference: a pool of all samples GN1C_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092495 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092495 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092495 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092495_1_Exiqon_14223136_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092495_sample_table.txt norm GSM1092495_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092495 1 GBM neurospheres derived from a tumor sample of GN1C patient GN1C_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of GN1C patient P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092495 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092495 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092495 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092495_1_Exiqon_14223136_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092495_sample_table.txt norm GSM1092495_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of GN1C patient not specified GSM1092494 1 GBM neurospheres derived from a tumor sample of G97C patient upon 14 days of differentiation G97C_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G97C patient upon 14 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092494 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092494 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092494 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092494_1_Exiqon_14223135_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092494_sample_table.txt norm GSM1092494_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G97C patient upon 14 days of differentiation not specified GSM1092494 2 common reference: a pool of all samples G97C_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092494 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092494 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092494 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092494_1_Exiqon_14223135_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092494_sample_table.txt norm GSM1092494_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092493 2 common reference: a pool of all samples G97C_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092493 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092493 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092493 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092493_1_Exiqon_14223134_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092493_sample_table.txt norm GSM1092493_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092493 1 GBM neurospheres derived from a tumor sample of G97C patient upon 4 days of differentiation G97C_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G97C patient upon 4 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092493 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092493 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092493 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092493_1_Exiqon_14223134_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092493_sample_table.txt norm GSM1092493_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G97C patient upon 4 days of differentiation not specified GSM1092492 1 GBM neurospheres derived from a tumor sample of G97C patient G97C_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G97C patient P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092492 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092492 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092492 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092492_1_Exiqon_14223133_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092492_sample_table.txt norm GSM1092492_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G97C patient not specified GSM1092492 2 common reference: a pool of all samples G97C_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092492 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092492 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092492 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092492_1_Exiqon_14223133_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092492_sample_table.txt norm GSM1092492_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092491 2 common reference: a pool of all samples G59_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092491 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092491 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092491 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092491_1_Exiqon_14223132_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092491_sample_table.txt norm GSM1092491_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092491 1 GBM neurospheres derived from a tumor sample of G59 patient upon 14 days of differentiation G59_14d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G59 patient upon 14 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092491 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092491 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092491 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092491_1_Exiqon_14223132_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092491_sample_table.txt norm GSM1092491_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G59 patient upon 14 days of differentiation not specified GSM1092490 1 GBM neurospheres derived from a tumor sample of G59 patient upon 4 days of differentiation G59_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G59 patient upon 4 days of differentiation P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092490 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092490 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092490 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092490_1_Exiqon_14223131_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092490_sample_table.txt norm GSM1092490_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G59 patient upon 4 days of differentiation not specified GSM1092490 2 common reference: a pool of all samples G59_4d Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092490 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092490 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092490 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092490_1_Exiqon_14223131_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092490_sample_table.txt norm GSM1092490_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092489 1 GBM neurospheres derived from a tumor sample of G59 patient G59_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 GBM neurospheres derived from a tumor sample of G59 patient P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092489 extract 1 total RNA P-GSE44843-12 ArrayExpress GSM1092489 LE 1 Hy3 P-GSE44843-13 ArrayExpress GSM1092489 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092489_1_Exiqon_14223130_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092489_sample_table.txt norm GSM1092489_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip GBM neurospheres derived from a tumor sample of G59 patient not specified GSM1092489 2 common reference: a pool of all samples G59_NS Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 pool of all samples P-GSE44843-4 ArrayExpress P-GSE44843-10 ArrayExpress P-GSE44843-11 ArrayExpress GSM1092489 extract 2 total RNA P-GSE44843-12 ArrayExpress GSM1092489 LE 2 Hy5 P-GSE44843-13 ArrayExpress GSM1092489 A-GEOD-11432 ArrayExpress array assay P-GSE44843-14 ArrayExpress P-GSE44843-15 ArrayExpress GSM1092489_1_Exiqon_14223130_S01.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-2 ArrayExpress GSM1092489_sample_table.txt norm GSM1092489_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip not specified not specified GSM1092488 1 reanalysis of GSM520525 Glioblastoma multiforme cells, differentiation, 4 days GBM_differentiation_4days_4 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 differentiated 4 days glioblastoma multiforme EFO EFO_0000519 brain EFO EFO_0000302 G63 P-GSE44843-4 ArrayExpress P-GSE44843-3 ArrayExpress P-GSE44843-5 ArrayExpress GSM1092488 extract 1 total RNA P-GSE44843-6 ArrayExpress GSM1092488 LE 1 Biotin P-GSE44843-7 ArrayExpress GSM1092488 A-AFFY-44 ArrayExpress array assay P-GSE44843-8 ArrayExpress P-GSE44843-9 ArrayExpress GSM1092488_G63_DF_4d_12209.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-1 ArrayExpress GSM1092488_sample_table.txt norm GSM1092488_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip differentiated 4 days G63 GSM1092487 1 reanalysis of GSM520526 Glioblastoma multiforme cells, neurospheres, 4 days GBM_neurosphere_4days_4 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 neurospheres glioblastoma multiforme EFO EFO_0000519 brain EFO EFO_0000302 G63 P-GSE44843-4 ArrayExpress P-GSE44843-3 ArrayExpress P-GSE44843-5 ArrayExpress GSM1092487 extract 1 total RNA P-GSE44843-6 ArrayExpress GSM1092487 LE 1 Biotin P-GSE44843-7 ArrayExpress GSM1092487 A-AFFY-44 ArrayExpress array assay P-GSE44843-8 ArrayExpress P-GSE44843-9 ArrayExpress GSM1092487_G63_NS_12209.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-1 ArrayExpress GSM1092487_sample_table.txt norm GSM1092487_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip neurospheres G63 GSM1092486 1 Glioblastoma multiforme cells, differentiation, 4 days GBM_differentiation_4days_3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 differentiated 4 days glioblastoma multiforme EFO EFO_0000519 brain EFO EFO_0000302 G59 P-GSE44843-4 ArrayExpress P-GSE44843-3 ArrayExpress P-GSE44843-5 ArrayExpress GSM1092486 extract 1 total RNA P-GSE44843-6 ArrayExpress GSM1092486 LE 1 Biotin P-GSE44843-7 ArrayExpress GSM1092486 A-AFFY-44 ArrayExpress array assay P-GSE44843-8 ArrayExpress P-GSE44843-9 ArrayExpress GSM1092486_G59_DF_4d_12209.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-1 ArrayExpress GSM1092486_sample_table.txt norm GSM1092486_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip differentiated 4 days G59 GSM1092485 1 Glioblastoma multiforme cells, neurospheres, 4 days GBM_neurosphere_4days_3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 neurospheres glioblastoma multiforme EFO EFO_0000519 brain EFO EFO_0000302 G59 P-GSE44843-4 ArrayExpress P-GSE44843-3 ArrayExpress P-GSE44843-5 ArrayExpress GSM1092485 extract 1 total RNA P-GSE44843-6 ArrayExpress GSM1092485 LE 1 Biotin P-GSE44843-7 ArrayExpress GSM1092485 A-AFFY-44 ArrayExpress array assay P-GSE44843-8 ArrayExpress P-GSE44843-9 ArrayExpress GSM1092485_G59_NS_12209.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-1 ArrayExpress GSM1092485_sample_table.txt norm GSM1092485_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip neurospheres G59 GSM1092484 1 reanalysis of GSM520523 Glioblastoma multiforme cells, differentiation, 4 days GBM_differentiation_4days_2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 differentiated 4 days glioblastoma multiforme EFO EFO_0000519 brain EFO EFO_0000302 G52 P-GSE44843-4 ArrayExpress P-GSE44843-3 ArrayExpress P-GSE44843-5 ArrayExpress GSM1092484 extract 1 total RNA P-GSE44843-6 ArrayExpress GSM1092484 LE 1 Biotin P-GSE44843-7 ArrayExpress GSM1092484 A-AFFY-44 ArrayExpress array assay P-GSE44843-8 ArrayExpress P-GSE44843-9 ArrayExpress GSM1092484_G52_DF_4d_081008.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-1 ArrayExpress GSM1092484_sample_table.txt norm GSM1092484_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip differentiated 4 days G52 GSM1092483 1 reanalysis of GSM520524 Glioblastoma multiforme cells, neurospheres, 4 days GBM_neurosphere_4days_2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 neurospheres glioblastoma multiforme EFO EFO_0000519 brain EFO EFO_0000302 G52 P-GSE44843-4 ArrayExpress P-GSE44843-3 ArrayExpress P-GSE44843-5 ArrayExpress GSM1092483 extract 1 total RNA P-GSE44843-6 ArrayExpress GSM1092483 LE 1 Biotin P-GSE44843-7 ArrayExpress GSM1092483 A-AFFY-44 ArrayExpress array assay P-GSE44843-8 ArrayExpress P-GSE44843-9 ArrayExpress GSM1092483_G52_NS_081008.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-1 ArrayExpress GSM1092483_sample_table.txt norm GSM1092483_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip neurospheres G52 GSM1092482 1 reanalysis of GSM520521 Glioblastoma multiforme cells, differentiation, 4 days GBM_differentiation_4days_1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 differentiated 4 days glioblastoma multiforme EFO EFO_0000519 brain EFO EFO_0000302 G48 P-GSE44843-4 ArrayExpress P-GSE44843-3 ArrayExpress P-GSE44843-5 ArrayExpress GSM1092482 extract 1 total RNA P-GSE44843-6 ArrayExpress GSM1092482 LE 1 Biotin P-GSE44843-7 ArrayExpress GSM1092482 A-AFFY-44 ArrayExpress array assay P-GSE44843-8 ArrayExpress P-GSE44843-9 ArrayExpress GSM1092482_G48_DF_4d_12209.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-1 ArrayExpress GSM1092482_sample_table.txt norm GSM1092482_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip differentiated 4 days G48 GSM1092481 1 reanalysis of GSM520522 Glioblastoma multiforme cells, neurospheres, 4 days GBM_neurosphere_4days_1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 neurospheres glioblastoma multiforme EFO EFO_0000519 brain EFO EFO_0000302 G48 P-GSE44843-4 ArrayExpress P-GSE44843-3 ArrayExpress P-GSE44843-5 ArrayExpress GSM1092481 extract 1 total RNA P-GSE44843-6 ArrayExpress GSM1092481 LE 1 Biotin P-GSE44843-7 ArrayExpress GSM1092481 A-AFFY-44 ArrayExpress array assay P-GSE44843-8 ArrayExpress P-GSE44843-9 ArrayExpress GSM1092481_G48_NS_12209.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.raw.1.zip P-GSE44843-1 ArrayExpress GSM1092481_sample_table.txt norm GSM1092481_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44843/E-GEOD-44843.processed.1.zip neurospheres G48