Source Name	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Characteristics [cell type]	Term Source REF	Term Accession Number	Characteristics [chip antibody]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [CELL LINE]	FactorValue [CELL TYPE]	Term Source REF	Term Accession Number	FactorValue [CHIP ANTIBODY]
GSM1089630 1	MS4221 cell line	CENP-A ChIP-seq [MS4221 cell line]	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089630 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089630	SRX246078	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766738_2.fastq.gz	SRR766738	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766738/SRR766738_2.fastq.gz	GSM1089630_MS4221_IMS13qregion.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089630 1	MS4221 cell line	CENP-A ChIP-seq [MS4221 cell line]	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089630 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089630	SRX246078	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766738_1.fastq.gz	SRR766738	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766738/SRR766738_1.fastq.gz	GSM1089630_MS4221_IMS13qregion.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089630 1	MS4221 cell line	CENP-A ChIP-seq [MS4221 cell line]	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089630 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089630	SRX246078	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766738_1.fastq.gz	SRR766738	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766738/SRR766738_1.fastq.gz	GSM1089630_MS4221_MS4221region.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089630 1	MS4221 cell line	CENP-A ChIP-seq [MS4221 cell line]	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089630 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089630	SRX246078	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766738_1.fastq.gz	SRR766738	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766738/SRR766738_1.fastq.gz	GSM1089630_MS4221_PDNC4region.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089630 1	MS4221 cell line	CENP-A ChIP-seq [MS4221 cell line]	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089630 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089630	SRX246078	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766738_1.fastq.gz	SRR766738	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766738/SRR766738_1.fastq.gz	GSM1089630_MS4221_CENPA_ChrX_HOR_bed.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089630 1	MS4221 cell line	CENP-A ChIP-seq [MS4221 cell line]	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089630 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089630	SRX246078	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766738_1.fastq.gz	SRR766738	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766738/SRR766738_1.fastq.gz	GSM1089630_MS4221_CENPA_ChrY_HOR_bed.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	MS4221	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089629 1	IMS13q cell line	CENP-A ChIP-seq [IMS13q cell line]	IMS13q	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089629 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089629	SRX246077	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766737_2.fastq.gz	SRR766737	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766737/SRR766737_2.fastq.gz	GSM1089629_IMS13q_MS4221region.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	IMS13q	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089629 1	IMS13q cell line	CENP-A ChIP-seq [IMS13q cell line]	IMS13q	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089629 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089629	SRX246077	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766737_1.fastq.gz	SRR766737	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766737/SRR766737_1.fastq.gz	GSM1089629_IMS13q_MS4221region.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	IMS13q	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089629 1	IMS13q cell line	CENP-A ChIP-seq [IMS13q cell line]	IMS13q	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089629 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089629	SRX246077	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766737_1.fastq.gz	SRR766737	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766737/SRR766737_1.fastq.gz	GSM1089629_IMS13q_PDNC4region.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	IMS13q	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089629 1	IMS13q cell line	CENP-A ChIP-seq [IMS13q cell line]	IMS13q	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089629 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089629	SRX246077	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766737_1.fastq.gz	SRR766737	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766737/SRR766737_1.fastq.gz	GSM1089629_IMS13q_IMS13qregion.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	IMS13q	lymphoblast	EFO	EFO_0000572	CENP-A (Abcam, ab13939)
GSM1089628 1	PDNC4 cell line	CENP-A ChIP-seq [PDNC4 cell line]	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089628 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089628	SRX246076	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766736_2.fastq.gz	SRR766736	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766736/SRR766736_2.fastq.gz	GSM1089628_PDNC4_MS4221region.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	CENP-A (Abcam, ab13939)
GSM1089628 1	PDNC4 cell line	CENP-A ChIP-seq [PDNC4 cell line]	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089628 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089628	SRX246076	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766736_1.fastq.gz	SRR766736	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766736/SRR766736_1.fastq.gz	GSM1089628_PDNC4_MS4221region.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	CENP-A (Abcam, ab13939)
GSM1089628 1	PDNC4 cell line	CENP-A ChIP-seq [PDNC4 cell line]	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089628 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089628	SRX246076	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766736_1.fastq.gz	SRR766736	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766736/SRR766736_1.fastq.gz	GSM1089628_PDNC4_IMS13qregion.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	CENP-A (Abcam, ab13939)
GSM1089628 1	PDNC4 cell line	CENP-A ChIP-seq [PDNC4 cell line]	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	CENP-A (Abcam, ab13939)	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089628 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089628	SRX246076	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766736_1.fastq.gz	SRR766736	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766736/SRR766736_1.fastq.gz	GSM1089628_PDNC4_PDNC4region.bedGraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44724/E-GEOD-44724.processed.1.zip	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	CENP-A (Abcam, ab13939)
GSM1089633 1	MS4221 cell line	Input DNA [MS4221 cell line]	MS4221	lymphoblast	EFO	EFO_0000572	None	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089633 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089633	SRX246081	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766741_2.fastq.gz	SRR766741	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766741/SRR766741_2.fastq.gz	  	  	MS4221	lymphoblast	EFO	EFO_0000572	None
GSM1089633 1	MS4221 cell line	Input DNA [MS4221 cell line]	MS4221	lymphoblast	EFO	EFO_0000572	None	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089633 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089633	SRX246081	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766741_1.fastq.gz	SRR766741	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766741/SRR766741_1.fastq.gz	  	  	MS4221	lymphoblast	EFO	EFO_0000572	None
GSM1089632 1	IMS13q cell line	Input DNA [IMS13q cell line]	IMS13q	lymphoblast	EFO	EFO_0000572	None	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089632 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089632	SRX246080	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766740_2.fastq.gz	SRR766740	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766740/SRR766740_2.fastq.gz	  	  	IMS13q	lymphoblast	EFO	EFO_0000572	None
GSM1089632 1	IMS13q cell line	Input DNA [IMS13q cell line]	IMS13q	lymphoblast	EFO	EFO_0000572	None	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089632 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089632	SRX246080	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766740_1.fastq.gz	SRR766740	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766740/SRR766740_1.fastq.gz	  	  	IMS13q	lymphoblast	EFO	EFO_0000572	None
GSM1089631 1	PDNC4 cell line	Input DNA [PDNC4 cell line]	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	None	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089631 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089631	SRX246079	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766739_2.fastq.gz	SRR766739	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766739/SRR766739_2.fastq.gz	  	  	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	None
GSM1089631 1	PDNC4 cell line	Input DNA [PDNC4 cell line]	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	None	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44724-1	ArrayExpress	P-GSE44724-2	ArrayExpress	GSM1089631 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1089631	SRX246079	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE44724-3	ArrayExpress	SRR766739_1.fastq.gz	SRR766739	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR766/SRR766739/SRR766739_1.fastq.gz	  	  	PDNC4	fibroblast	EFO	http://purl.org/obo/owl/CL#CL_0000057	None