Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [Organism] Term Source REF Term Accession Number Characteristics [cell line] Term Source REF Term Accession Number Characteristics [cell type] Characteristics [shRNA] Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [SHRNA] GSM1088405 1 STAT1_#3_dup2 T-ALL cell line, shSTAT1 JURKAT_shSTAT1#3_dup2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shSTAT1 P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088405 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088405 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088405 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088405_AL2010100612.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088405_sample_table.txt norm GSM1088405_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shSTAT1 GSM1088404 1 STAT1_#3_dup1 T-ALL cell line, shSTAT1 JURKAT_shSTAT1#3_dup1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shSTAT1 P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088404 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088404 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088404 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088404_AL2010100611.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088404_sample_table.txt norm GSM1088404_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shSTAT1 GSM1088403 1 STAT1_#2_dup2 T-ALL cell line, shSTAT1 JURKAT_shSTAT1#2_dup2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shSTAT1 P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088403 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088403 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088403 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088403_AL2010100610.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088403_sample_table.txt norm GSM1088403_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shSTAT1 GSM1088402 1 STAT1_#2_dup1 T-ALL cell line, shSTAT1 JURKAT_shSTAT1#2_dup1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shSTAT1 P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088402 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088402 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088402 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088402_AL2010100609.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088402_sample_table.txt norm GSM1088402_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shSTAT1 GSM1088401 1 TYK2_#3_dup2 T-ALL cell line, shTYK2 JURKAT_shTYK2#3_dup2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shTYK2 P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088401 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088401 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088401 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088401_AL2010100608.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088401_sample_table.txt norm GSM1088401_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shTYK2 GSM1088400 1 TYK2_#3_dup1 T-ALL cell line, shTYK2 JURKAT_shTYK2#3_dup1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shTYK2 P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088400 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088400 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088400 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088400_AL2010100607.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088400_sample_table.txt norm GSM1088400_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shTYK2 GSM1088399 1 TYK2_#2_dup2 T-ALL cell line, shTYK2 JURKAT_shTYK2#2_dup2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shTYK2 P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088399 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088399 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088399 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088399_AL2010100606.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088399_sample_table.txt norm GSM1088399_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shTYK2 GSM1088398 1 TYK2_#2_dup1 T-ALL cell line, shTYK2 JURKAT_shTYK2#2_dup1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shTYK2 P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088398 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088398 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088398 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088398_AL2010100605.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088398_sample_table.txt norm GSM1088398_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shTYK2 GSM1088397 1 Luc_dup2 T-ALL cell line, shLuc control JURKAT_shLuc_dup2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shLuc P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088397 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088397 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088397 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088397_AL2010100604.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088397_sample_table.txt norm GSM1088397_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shLuc GSM1088396 1 Luc_dup1 T-ALL cell line, shLuc control JURKAT_shLuc_dup1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shLuc P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088396 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088396 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088396 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088396_AL2010100603.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088396_sample_table.txt norm GSM1088396_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shLuc GSM1088395 1 GFP_dup2 T-ALL cell line, shGFP control JURKAT_shGFP_dup2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shGFP P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088395 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088395 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088395 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088395_AL2010100602.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088395_sample_table.txt norm GSM1088395_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shGFP GSM1088394 1 GFP_dup1 T-ALL cell line, shGFP control JURKAT_shGFP_dup1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Jurkat EFO EFO_0002796 T-ALL cell line shGFP P-GSE44652-2 ArrayExpress P-GSE44652-3 ArrayExpress P-GSE44652-4 ArrayExpress GSM1088394 extract 1 total RNA P-GSE44652-5 ArrayExpress GSM1088394 LE 1 Biotin P-GSE44652-6 ArrayExpress GSM1088394 A-AFFY-44 ArrayExpress array assay P-GSE44652-7 ArrayExpress P-GSE44652-8 ArrayExpress GSM1088394_AL2010100601.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.raw.1.zip P-GSE44652-1 ArrayExpress GSM1088394_sample_table.txt norm GSM1088394_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44652/E-GEOD-44652.processed.1.zip shGFP