Source Name	Comment [Sample_characteristics]	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [Sex]	Term Source REF	Term Accession Number	Characteristics [developmental stage]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [transgene]	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]
GSM1076684 1	strain: OP353(official name : OP353 genotype : unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119) outcross : 3 transgene : nhr-77 tags : Bombard tag : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline.  The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain.  The NHR-77::EGFP fusion protein is expressed in the correct nhr-77 spatio-temporal expression pattern.  This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-77 transcription factor. made_by : R Waterston )	ChIP DNA; Antibody information listed below: official name: Anti-eGFP; target name: eGFP; host: Goat; antigen: Full-length EGFP; clonal: Polyclonal; purified: Affinity; company: Lab; catalog: Hyman Goat anti-GFP; reference: PMID: 18391959; short description: A Bacterially expressed full-length EGFP protein tagged with 6xHis was used to raise a goat antisera and the resulting antibodies were affinity-purified.	Snyder_NHR-77_GFP_L1_rep2_GFP_TGCT	Snyder_NHR-77_GFP_L1_rep2_GFP_TGCT	hermaphrodite	EFO	EFO_0001267	fed L1	unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119)	Caenorhabditis elegans	EFO	http://purl.obolibrary.org/obo/NCBITaxon_6239	nhr-77	P-GSE44012-1	ArrayExpress	GSM1076684 extract 1	Illumina Genome Analyzer	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1076684	SRX233458	Illumina Genome Analyzer (Caenorhabditis elegans)	sequencing assay	P-GSE44012-2	ArrayExpress	SRR701514	SRR701514	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR701/SRR701514/SRR701514.fastq.gz	GSM1076684_Snyder_NHR-77_GFP_L1_rep2-1.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44012/E-GEOD-44012.processed.1.zip
GSM1076684 1	strain: OP353(official name : OP353 genotype : unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119) outcross : 3 transgene : nhr-77 tags : Bombard tag : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline.  The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain.  The NHR-77::EGFP fusion protein is expressed in the correct nhr-77 spatio-temporal expression pattern.  This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-77 transcription factor. made_by : R Waterston )	ChIP DNA; Antibody information listed below: official name: Anti-eGFP; target name: eGFP; host: Goat; antigen: Full-length EGFP; clonal: Polyclonal; purified: Affinity; company: Lab; catalog: Hyman Goat anti-GFP; reference: PMID: 18391959; short description: A Bacterially expressed full-length EGFP protein tagged with 6xHis was used to raise a goat antisera and the resulting antibodies were affinity-purified.	Snyder_NHR-77_GFP_L1_rep2_GFP_TGCT	Snyder_NHR-77_GFP_L1_rep2_GFP_TGCT	hermaphrodite	EFO	EFO_0001267	fed L1	unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119)	Caenorhabditis elegans	EFO	http://purl.obolibrary.org/obo/NCBITaxon_6239	nhr-77	P-GSE44012-1	ArrayExpress	GSM1076684 extract 1	Illumina Genome Analyzer	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1076684	SRX233458	Illumina Genome Analyzer (Caenorhabditis elegans)	sequencing assay	P-GSE44012-2	ArrayExpress	SRR701514	SRR701514	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR701/SRR701514/SRR701514.fastq.gz	GSM1076684_Snyder_NHR-77_GFP_L1_rep2.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44012/E-GEOD-44012.processed.1.zip
GSM1076683 1	strain: OP353(official name : OP353 genotype : unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119) outcross : 3 transgene : nhr-77 tags : Bombard tag : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline.  The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain.  The NHR-77::EGFP fusion protein is expressed in the correct nhr-77 spatio-temporal expression pattern.  This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-77 transcription factor. made_by : R Waterston )	ChIP DNA; Antibody information listed below: official name: Anti-eGFP; target name: eGFP; host: Goat; antigen: Full-length EGFP; clonal: Polyclonal; purified: Affinity; company: Lab; catalog: Hyman Goat anti-GFP; reference: PMID: 18391959; short description: A Bacterially expressed full-length EGFP protein tagged with 6xHis was used to raise a goat antisera and the resulting antibodies were affinity-purified.	Snyder_NHR-77_GFP_L1_rep1_GFP_ACGT	Snyder_NHR-77_GFP_L1_rep1_GFP_ACGT	hermaphrodite	EFO	EFO_0001267	fed L1	unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119)	Caenorhabditis elegans	EFO	http://purl.obolibrary.org/obo/NCBITaxon_6239	nhr-77	P-GSE44012-1	ArrayExpress	GSM1076683 extract 1	Illumina Genome Analyzer	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1076683	SRX233457	Illumina Genome Analyzer (Caenorhabditis elegans)	sequencing assay	P-GSE44012-3	ArrayExpress	SRR701513	SRR701513	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR701/SRR701513/SRR701513.fastq.gz	GSM1076683_Snyder_NHR-77_GFP_L1_rep1.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44012/E-GEOD-44012.processed.2.zip
GSM1076683 1	strain: OP353(official name : OP353 genotype : unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119) outcross : 3 transgene : nhr-77 tags : Bombard tag : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline.  The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain.  The NHR-77::EGFP fusion protein is expressed in the correct nhr-77 spatio-temporal expression pattern.  This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-77 transcription factor. made_by : R Waterston )	ChIP DNA; Antibody information listed below: official name: Anti-eGFP; target name: eGFP; host: Goat; antigen: Full-length EGFP; clonal: Polyclonal; purified: Affinity; company: Lab; catalog: Hyman Goat anti-GFP; reference: PMID: 18391959; short description: A Bacterially expressed full-length EGFP protein tagged with 6xHis was used to raise a goat antisera and the resulting antibodies were affinity-purified.	Snyder_NHR-77_GFP_L1_rep1_GFP_ACGT	Snyder_NHR-77_GFP_L1_rep1_GFP_ACGT	hermaphrodite	EFO	EFO_0001267	fed L1	unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119)	Caenorhabditis elegans	EFO	http://purl.obolibrary.org/obo/NCBITaxon_6239	nhr-77	P-GSE44012-1	ArrayExpress	GSM1076683 extract 1	Illumina Genome Analyzer	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1076683	SRX233457	Illumina Genome Analyzer (Caenorhabditis elegans)	sequencing assay	P-GSE44012-3	ArrayExpress	SRR701513	SRR701513	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR701/SRR701513/SRR701513.fastq.gz	GSM1076683_Snyder_NHR-77_GFP_L1_rep1-1.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44012/E-GEOD-44012.processed.2.zip
GSM1076682 1	strain: OP353(official name : OP353 genotype : unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119) outcross : 3 transgene : nhr-77 tags : Bombard tag : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline.  The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain.  The NHR-77::EGFP fusion protein is expressed in the correct nhr-77 spatio-temporal expression pattern.  This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-77 transcription factor. made_by : R Waterston )	input DNA	Snyder_NHR-77_GFP_L1_rep2_Input_CATT	Snyder_NHR-77_GFP_L1_rep2_Input_CATT	hermaphrodite	EFO	EFO_0001267	fed L1	unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119)	Caenorhabditis elegans	EFO	http://purl.obolibrary.org/obo/NCBITaxon_6239	nhr-77	P-GSE44012-1	ArrayExpress	GSM1076682 extract 1	Illumina Genome Analyzer	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1076682	SRX233456	Illumina Genome Analyzer (Caenorhabditis elegans)	sequencing assay	P-GSE44012-2	ArrayExpress	SRR701512	SRR701512	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR701/SRR701512/SRR701512.fastq.gz	    	  
GSM1076681 1	strain: OP353(official name : OP353 genotype : unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119) outcross : 3 transgene : nhr-77 tags : Bombard tag : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline.  The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain.  The NHR-77::EGFP fusion protein is expressed in the correct nhr-77 spatio-temporal expression pattern.  This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-77 transcription factor. made_by : R Waterston )	input DNA	Snyder_NHR-77_GFP_L1_rep1_Input_GTAT	Snyder_NHR-77_GFP_L1_rep1_Input_GTAT	hermaphrodite	EFO	EFO_0001267	fed L1	unc119(ed3);wgIs353(nhr-77::TY1 EGFP FLAG;unc119)	Caenorhabditis elegans	EFO	http://purl.obolibrary.org/obo/NCBITaxon_6239	nhr-77	P-GSE44012-1	ArrayExpress	GSM1076681 extract 1	Illumina Genome Analyzer	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1076681	SRX233455	Illumina Genome Analyzer (Caenorhabditis elegans)	sequencing assay	P-GSE44012-2	ArrayExpress	SRR701511	SRR701511	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR701/SRR701511/SRR701511.fastq.gz